View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14520_high_3 (Length: 460)
Name: NF14520_high_3
Description: NF14520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14520_high_3 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 18 - 450
Target Start/End: Complemental strand, 40947990 - 40947560
Alignment:
| Q |
18 |
catggaagaatcatgcatcatgtgtcagaggacaaaagcagatgatgggcttcctagatggttcagatacgaggatgggatttggaaagatgatgaaata |
117 |
Q |
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| T |
40947990 |
catggaagaatcatgcatcatgtgtcagaggacaaaagcagatgatggacttcctagatggttcagatacgaggatgggatttggaaagatgatgaaata |
40947891 |
T |
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| Q |
118 |
agttctcttgcactttaatttcagaagatnnnnnnntcatactccattatatttctcttttactaaattactccctagatcttctaatttaactcaaagt |
217 |
Q |
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| T |
40947890 |
agttctcttgcactttaatttgagaagataaaaaaaccatactctattatatttctcttttactaaattactccctagatcttctaatttaactcaaagt |
40947791 |
T |
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| Q |
218 |
ttctatttcaccatttatttannnnnnnctcaaattaatcatctaactttaggaattcaaaacacaatatatcaaaattgacannnnnnnnnaattatgt |
317 |
Q |
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| T |
40947790 |
ttctatttcaccatttattta-ttttttctcaaattaatcatctaactttaggaattcaaaacacaatgtatgaaaattgaca-ttttttttaattatgt |
40947693 |
T |
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| Q |
318 |
tcatatttaagagtagattaatgcttccctagctagtttgggttgaaatgtttacgtagttttatgtttgtgtataatattttgctgannnnnnngttga |
417 |
Q |
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| T |
40947692 |
tcatatttaagagtagattaatgcttccctagctagtttgggttgaaatgtttacgtagttttatgtttgtgtataatattttgctgatttttttgttga |
40947593 |
T |
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| Q |
418 |
cttcacaaaagtaggttttcccattgcttcatt |
450 |
Q |
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| T |
40947592 |
cttcacacaagtaggttttcccattgcttcatt |
40947560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 25 - 133
Target Start/End: Original strand, 45656541 - 45656649
Alignment:
| Q |
25 |
gaatcatgcatcatgtgtcagaggacaaaagcagatgatgggcttcctagatggttcagatacgaggatgggatttggaaagatgatgaaataagttctc |
124 |
Q |
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||||| |||||||||||| ||||||||| || |||||||||||| ||| ||||||| || ||||| |||||||||||| |||||||| | || |||| |
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| T |
45656541 |
gaatcgtgcatcatgtgtaagaggacaagagatgatgatgggcttgttaggtggttcaagtatgaggaagggatttggaaacatgatgaagttagctctc |
45656640 |
T |
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| Q |
125 |
ttgcacttt |
133 |
Q |
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| T |
45656641 |
ttgcacttt |
45656649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 38514 - 38401
Alignment:
| Q |
18 |
catggaagaatcatgcatcatgtgtcagaggacaaaagcagatgatgggcttcctagatggttcagatacgaggatgggatttggaaagatgatgaaata |
117 |
Q |
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|||| |||||||||||||||||||||| | |||| || ||| |||||||||||| ||||| || || ||||| |||||||||||| |||||||| | |
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| T |
38514 |
catgaaagaatcatgcatcatgtgtcatcgaacaagagttgattgtgggcttcctaggtggtttaggtatgaggaagggatttggaaacatgatgaagtt |
38415 |
T |
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| Q |
118 |
agttctcttgcact |
131 |
Q |
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| T |
38414 |
agctctcttgcact |
38401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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