View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14520_high_5 (Length: 414)
Name: NF14520_high_5
Description: NF14520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14520_high_5 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 171 - 414
Target Start/End: Original strand, 46999656 - 46999899
Alignment:
| Q |
171 |
gtccataatatttcaggagaagaaaatgagttggacagttggagatgctgtggactataaaggcttcccagctgataggtccaaaactggtggttgggtt |
270 |
Q |
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| T |
46999656 |
gtccataatatttcaggagaagaaaatgagttggacagttggagatgctgtggactataaaggcttcccagctgataggtccaaaactggtggttgggtt |
46999755 |
T |
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| Q |
271 |
ccagctgctcttattttaggtttgttacacttctagcataaccactcaaactctttatacctcatgagggggtgtagaattagaaacacagtgtgtattt |
370 |
Q |
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| T |
46999756 |
ccagctgctctcattttaggtttgttacacttctagcataaccactcaaactctttatacctcatgagggggtgtagaattagaaacacagtgtgtattt |
46999855 |
T |
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| Q |
371 |
ggtgatggtgttacatatatgatccatttttggagaacttttcc |
414 |
Q |
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| T |
46999856 |
ggtgatggttttacatatatgatccatttttggagaacttttcc |
46999899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 10 - 136
Target Start/End: Original strand, 46999498 - 46999624
Alignment:
| Q |
10 |
gaagtgtatatacaacaatctcaagagtataccttctttctacattaacacctagagttcttttctttgtgaaacttcataacatggttagtttttagtc |
109 |
Q |
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| T |
46999498 |
gaagtgtatatacaacaatctcaagagtataccttctttctacattaacacctagagttcttttctttgtgaaacttcataacatggttagtttttagtc |
46999597 |
T |
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| Q |
110 |
aatggaagctttaacaaacttaagaga |
136 |
Q |
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| T |
46999598 |
aatggaagctttaacaaacttaagaga |
46999624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 111; Significance: 7e-56; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 253 - 411
Target Start/End: Original strand, 7935014 - 7935172
Alignment:
| Q |
253 |
aaaactggtggttgggttccagctgctcttattttaggtttgttacacttctagcataaccactcaaactctttatacctcatgagggggtgtagaatta |
352 |
Q |
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| T |
7935014 |
aaaactggtgattgggttccagctgctctcattttaggtttgttacacttctagcataaccactcaaactctttataattcatgaggtgatgtaaagtta |
7935113 |
T |
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| Q |
353 |
gaaacacagtgtgtatttggtgatggtgttacatatatgatccatttttggagaacttt |
411 |
Q |
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| T |
7935114 |
gaaatacatagtgtatttggtgatggtgttacatatatgatccatttttggagcacttt |
7935172 |
T |
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