View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14520_low_10 (Length: 339)

Name: NF14520_low_10
Description: NF14520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14520_low_10
NF14520_low_10
[»] chr2 (6 HSPs)
chr2 (6-307)||(35695224-35695528)
chr2 (137-294)||(42006475-42006631)
chr2 (107-294)||(34922008-34922190)
chr2 (107-293)||(35021092-35021277)
chr2 (171-210)||(1642476-1642515)
chr2 (106-294)||(20586282-20586470)
[»] chr1 (12 HSPs)
chr1 (106-297)||(26767642-26767832)
chr1 (116-293)||(9388826-9389003)
chr1 (106-297)||(41666186-41666377)
chr1 (100-293)||(7191879-7192072)
chr1 (106-297)||(43416253-43416444)
chr1 (100-293)||(43670817-43671009)
chr1 (192-297)||(27323505-27323609)
chr1 (123-254)||(43344927-43345056)
chr1 (133-215)||(38275954-38276036)
chr1 (123-293)||(12857391-12857561)
chr1 (176-293)||(15061569-15061686)
chr1 (123-293)||(44166578-44166746)
[»] chr4 (16 HSPs)
chr4 (106-297)||(43365821-43366012)
chr4 (123-293)||(12499135-12499304)
chr4 (166-294)||(51871683-51871810)
chr4 (106-293)||(1351387-1351573)
chr4 (163-293)||(11996270-11996401)
chr4 (106-215)||(44363321-44363430)
chr4 (101-297)||(15562131-15562327)
chr4 (115-293)||(18879119-18879297)
chr4 (201-293)||(44363032-44363124)
chr4 (106-182)||(51871598-51871674)
chr4 (101-148)||(12499032-12499079)
chr4 (106-148)||(11996004-11996046)
chr4 (114-183)||(6216420-6216488)
chr4 (100-148)||(6216213-6216261)
chr4 (171-215)||(40838042-40838086)
chr4 (101-145)||(44362929-44362973)
[»] chr6 (12 HSPs)
chr6 (107-297)||(10244405-10244595)
chr6 (101-297)||(28587731-28587927)
chr6 (106-293)||(6196722-6196909)
chr6 (164-244)||(33446931-33447011)
chr6 (180-292)||(12480423-12480535)
chr6 (106-215)||(2236938-2237047)
chr6 (106-215)||(4838001-4838110)
chr6 (106-148)||(6198102-6198144)
chr6 (166-286)||(33819887-33820007)
chr6 (171-213)||(35187570-35187612)
chr6 (107-148)||(28587639-28587680)
chr6 (171-215)||(2145556-2145600)
[»] chr8 (7 HSPs)
chr8 (101-297)||(13267811-13268006)
chr8 (106-259)||(3207641-3207794)
chr8 (101-297)||(32089146-32089340)
chr8 (106-244)||(39186175-39186314)
chr8 (100-293)||(24587104-24587296)
chr8 (101-293)||(20771545-20771737)
chr8 (101-293)||(20781339-20781531)
[»] scaffold0633 (1 HSPs)
scaffold0633 (106-297)||(8852-9043)
[»] chr7 (20 HSPs)
chr7 (106-297)||(3565486-3565677)
chr7 (162-293)||(27567407-27567538)
chr7 (107-293)||(37327417-37327603)
chr7 (136-297)||(45871760-45871921)
chr7 (107-215)||(26472004-26472110)
chr7 (107-215)||(26548444-26548550)
chr7 (170-271)||(40717585-40717686)
chr7 (166-293)||(29366471-29366598)
chr7 (134-254)||(17298691-17298811)
chr7 (106-293)||(20896288-20896477)
chr7 (235-293)||(27569363-27569421)
chr7 (127-293)||(46303682-46303847)
chr7 (115-213)||(39751209-39751307)
chr7 (171-291)||(23415976-23416094)
chr7 (106-215)||(40744582-40744691)
chr7 (171-214)||(11752910-11752953)
chr7 (101-148)||(29366368-29366415)
chr7 (114-236)||(44857848-44857969)
chr7 (100-165)||(42055302-42055366)
chr7 (101-153)||(37327314-37327366)
[»] chr5 (12 HSPs)
chr5 (116-293)||(40324366-40324543)
chr5 (106-293)||(39741387-39741574)
chr5 (115-293)||(5548120-5548298)
chr5 (106-259)||(13639519-13639672)
chr5 (107-293)||(30223807-30223992)
chr5 (114-251)||(3577572-3577708)
chr5 (137-293)||(14626347-14626503)
chr5 (106-214)||(13361006-13361114)
chr5 (106-196)||(42552562-42552652)
chr5 (107-211)||(39917416-39917520)
chr5 (106-147)||(3577791-3577832)
chr5 (166-215)||(37510290-37510339)
[»] chr3 (8 HSPs)
chr3 (101-293)||(38216098-38216291)
chr3 (106-293)||(39492307-39492494)
chr3 (114-293)||(43071662-43071839)
chr3 (166-293)||(49726522-49726649)
chr3 (106-259)||(14742110-14742259)
chr3 (101-148)||(38216347-38216394)
chr3 (101-147)||(39450637-39450683)
chr3 (179-251)||(3979055-3979127)
[»] scaffold0157 (2 HSPs)
scaffold0157 (123-293)||(21173-21342)
scaffold0157 (101-148)||(21398-21445)
[»] scaffold0122 (1 HSPs)
scaffold0122 (106-259)||(17682-17835)
[»] scaffold0062 (2 HSPs)
scaffold0062 (114-259)||(20253-20393)
scaffold0062 (114-259)||(30421-30561)


Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 6 - 307
Target Start/End: Original strand, 35695224 - 35695528
Alignment:
Q  6 aagaaaattatttgattggagacaaatttgggggaataaattatttgggggaataattatttgatggtgataacatgttataaaacatgctatatccccc 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  35695224 aagaaaattatttgattggagacaaatttgggggaataaattatttggggaaataattatttgatggtgataacatgttataaaacatgttatatccccc 35695323  T
Q  106 ---attttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacat 202  Q
       ||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||| ||||||||||| |||||||||||    
T  35695324 cctattttcaccattttgtaaaattggtccccttattttaaaattcgacaactttggtccctttatctaatattttatctaaaatatggtgatataacat 35695423  T
Q  203 gttttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacatttaaaacctaccgaa 302  Q
    |||| |||||||| ||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  35695424 gtttcaaatgaagtattcaaggaaattttcttacgatttcatcgatgttgatattttctcgccttcatattatataccacgacatttaaaacctaccgaa 35695523  T
Q  303 tcaac 307  Q
    |||||    
T  35695524 tcaac 35695528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 137 - 294
Target Start/End: Complemental strand, 42006631 - 42006475
Alignment:
Q  137 attttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgttttaaatgaagcattcaagaaaattttcttac 236  Q
    ||||||||||| ||||  |||  ||| ||||| |||||||||||| ||||||||||||||| ||||||||||||| |||  ||||| | ||||||| |||    
T  42006631 attttaaaatttcacagttttggtccttttatataatattttgtcgaaaatatgatgatatgacatgttttaaattaagttttcaaaagaattttc-tac 42006533  T
Q  237 gatttcattgatgttgatattttctcaccttcatattatataccacgacatttaaaac 294  Q
    ||||| ||  | ||||||||||||||| ||| | || ||||||||| |||||||||||    
T  42006532 gattttatcaaagttgatattttctcatctttagataatataccacaacatttaaaac 42006475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 107 - 294
Target Start/End: Original strand, 34922008 - 34922190
Alignment:
Q  107 ttttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgttt 206  Q
    ||||||| |||||| ||| || ||| || ||||||||||||| ||   |||  ||||| ||| |||||| ||  ||||||||||||||||||||||||||    
T  34922008 ttttcactattttgcaaatttagtctccctattttaaaattcgacggttttggtccctctatataatatcttcactaaaatatgatgatataacatgttt 34922107  T
Q  207 taaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacatttaaaac 294  Q
    |||||||||  || ||   |||||||||||||||| ||  |||||||     ||||| |||||||| |||| ||| ||||||||||||    
T  34922108 taaatgaagtttttaacgtaattttcttacgattttatcaatgttga-----tctcatcttcatatcatattccaagacatttaaaac 34922190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 107 - 293
Target Start/End: Complemental strand, 35021277 - 35021092
Alignment:
Q  107 ttttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgttt 206  Q
    |||||| ||||||| ||||||||||| | |||| |||| ||  |||| |||  ||| | |||| ||| |||||||||||||||  |||||| | ||||||    
T  35021277 ttttcatcattttgcaaaattggtcctcctattataaa-ttagacaattttggtccttctatcaaattttttgtctaaaatattgtgatatgatatgttt 35021179  T
Q  207 taaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacatttaaaa 293  Q
    |||||||||  |||||||||||||| |  | |||| || ||||||||| ||||   | ||||| || |||| |||| ||||||||||    
T  35021178 taaatgaagttttcaagaaaattttgtcgcaattttatcgatgttgatctttttctatcttcagatcatattccacaacatttaaaa 35021092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 171 - 210
Target Start/End: Complemental strand, 1642515 - 1642476
Alignment:
Q  171 aatattttgtctaaaatatgatgatataacatgttttaaa 210  Q
    ||||||| |||||||||||||||||||||||| |||||||    
T  1642515 aatatttggtctaaaatatgatgatataacattttttaaa 1642476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 294
Target Start/End: Original strand, 20586282 - 20586470
Alignment:
Q  106 attttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaat-atgatgatataacatgt 204  Q
    |||||||| ||||| |||||||||| ||| |||||| |  |||  ||  |||  |||| | ||| ||||||||||| ||||| |  |||||||| ||| |    
T  20586282 attttcacaattttataaaattggttcccctattttcattttcgccagttttggtcccgtcatcaaatattttgtcaaaaattacaatgatataccatat 20586381  T
Q  205 tttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacatttaaaac 294  Q
    ||||||||||   || ||| ||| | |||| ||||||||| ||| ||||| ||||| || ||| |||| |||||| ||||||||||||||    
T  20586382 tttaaatgaattttttaaggaaactatcttgcgatttcatcgatattgattttttc-catctttatatcatatactacgacatttaaaac 20586470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 106 - 297
Target Start/End: Original strand, 26767642 - 26767832
Alignment:
Q  106 attttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgtt 205  Q
    ||||||||||||||||||||||| |||||| |||||||||||  |||  |||  ||||| ||| | ||||||||||||||||||||||||||||||||||    
T  26767642 attttcaccattttgtaaaattgttcccct-attttaaaatttgacagttttggtccctctatattatattttgtctaaaatatgatgatataacatgtt 26767740  T
Q  206 ttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacatttaaaaccta 297  Q
     |||||||||  || |||||| |||||||| ||||| || |||||||||||||||||| |||||||| |||||||| |||||||||||||||    
T  26767741 ctaaatgaagtttttaagaaagttttcttatgattttatcgatgttgatattttctcatcttcatatcatataccaagacatttaaaaccta 26767832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 116 - 293
Target Start/End: Original strand, 9388826 - 9389003
Alignment:
Q  116 ttttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgttttaaatgaag 215  Q
    ||||||||||||||||||| ||||||||||||| |||| |||| ||||| ||||| | ||||||| ||||||||| |||||||||||||||||||||  |    
T  9388826 ttttgtaaaattggtccccctattttaaaattcgacaattttagtccctctatctcaaattttgtttaaaatatggtgatataacatgttttaaatggtg 9388925  T
Q  216 cattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacatttaaaa 293  Q
      || |||||||| |||||| |||||||||| |||||||||||||||  ||||| || |||||||||| |||||||||    
T  9388926 tttttaagaaaatattcttatgatttcattgttgttgatattttctcgtcttcagatcatataccacggcatttaaaa 9389003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 106 - 297
Target Start/End: Complemental strand, 41666377 - 41666186
Alignment:
Q  106 attttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgtt 205  Q
    ||||||| |||||| |||||||| | ||| ||||||||||||| |||  |||  |||| |||  ||||||||| ||||||||||||||| ||||||||||    
T  41666377 attttcatcattttataaaattgattcccctattttaaaattcgacagttttggtcccattacataatattttatctaaaatatgatgacataacatgtt 41666278  T
Q  206 ttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacatttaaaaccta 297  Q
    ||||||||||  |||||||||||||||||||| ||||   || | |||||||||||||  ||||||| ||||||||||||||| ||||||||    
T  41666277 ttaaatgaagttttcaagaaaattttcttacgttttcgccgacgatgatattttctcattttcatatcatataccacgacattcaaaaccta 41666186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 100 - 293
Target Start/End: Original strand, 7191879 - 7192072
Alignment:
Q  100 tcccccattttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataa 199  Q
    ||||| ||||| | |||||||  |||| ||||||| ||||||||||||| |||  |||  ||||||||||||| ||||||||||||||||| ||||||||    
T  7191879 tcccctattttaatcattttgccaaataggtccccatattttaaaattcgacagttttggtccctttatctaaaattttgtctaaaatatggtgatataa 7191978  T
Q  200 catgttttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacatttaaaa 293  Q
    ||||||||||||| ||  |||||   |||| | |||||||||||| |||||||||||||| ||| ||||| || ||||| || || ||||||||    
T  7191979 catgttttaaatggagttttcaaaggaattattttacgatttcatcgatgttgatattttatcatcttcagatcatatatcatgatatttaaaa 7192072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 106 - 297
Target Start/End: Original strand, 43416253 - 43416444
Alignment:
Q  106 attttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgtt 205  Q
    ||||||||||||||| ||||||| ||| ||  ||||||||| | |||  |||  ||||| ||| ||||| ||||||||||||||| ||||||||||||||    
T  43416253 attttcaccattttgcaaaattgatcctctg-ttttaaaat-cgacagttttggtccctctatttaataatttgtctaaaatatggtgatataacatgtt 43416350  T
Q  206 ttaaatgaagcattcaagaaaattttcttacga--tttcattgatgttgatattttctcaccttcatattatataccacgacatttaaaaccta 297  Q
    |||||||||   || ||  ||||||||||| ||  |||||| |||||| ||||||| |||  |||| ||||||||| |||||||||||||||||    
T  43416351 ttaaatgaaatttttaaagaaattttcttaagatttttcatcgatgttaatattttatcatattcacattatatactacgacatttaaaaccta 43416444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 100 - 293
Target Start/End: Complemental strand, 43671009 - 43670817
Alignment:
Q  100 tcccccattttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataa 199  Q
    ||||| ||||||| |||||||  |||||| || | |||||||||||||| |||| ||| |||||| |||   ||||||||||||||||||  |||||  |    
T  43671009 tcccctattttcatcattttgcgaaattgttctc-ttattttaaaattcgacaattttgatccctctattacatattttgtctaaaatattgtgatacta 43670911  T
Q  200 catgttttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacatttaaaa 293  Q
     ||||||| |||||||  || |||  |||||| |||| ||||||| ||||||||||||||   | |||||||| |||| |||||||||||||||    
T  43670910 tatgtttttaatgaagtttttaagggaattttgttacaatttcatcgatgttgatatttttctatcttcatatcatattccacgacatttaaaa 43670817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 192 - 297
Target Start/End: Original strand, 27323505 - 27323609
Alignment:
Q  192 tgatataacatgttttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacatttaa 291  Q
    |||||| |||||||||||||||||  || ||| ||||||| |||||||||||| |||||||||||||| ||| ||| | ||  |||||||||||||||||    
T  27323505 tgatatgacatgttttaaatgaagtttttaaggaaatttt-ttacgatttcatggatgttgatattttatcatctttagatcgtataccacgacatttaa 27323603  T
Q  292 aaccta 297  Q
    ||||||    
T  27323604 aaccta 27323609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 123 - 254
Target Start/End: Complemental strand, 43345056 - 43344927
Alignment:
Q  123 aaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgttttaaatgaagcattcaa 222  Q
    |||||| ||||||||||||||||||| |||| |||| ||||| |||  ||||||  |||||||||||  |||||| | |||||||||||||||  || ||    
T  43345056 aaattgatccccttattttaaaattcgacaattttagtccctatatgaaatatt--gtctaaaatattgtgatatgatatgttttaaatgaagtttttaa 43344959  T
Q  223 gaaaattttcttacgatttcattgatgttgat 254  Q
     |||| ||| |||| |||||||||||||||||    
T  43344958 aaaaaatttgttacaatttcattgatgttgat 43344927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 215
Target Start/End: Complemental strand, 38276036 - 38275954
Alignment:
Q  133 ccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgttttaaatgaag 215  Q
    |||||||||||||||| |||| |||  |||||||||| ||||| |||||||||||||  |||||| | |||||||||||||||    
T  38276036 ccttattttaaaattcaacaattttggtccctttatcaaatatgttgtctaaaatattgtgatatgatatgttttaaatgaag 38275954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 293
Target Start/End: Complemental strand, 12857561 - 12857391
Alignment:
Q  123 aaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgttttaaatgaagcattcaa 222  Q
    |||||||||| | ||||||||||||  |||| |||  || || |||| ||| ||||||||| |||||  |||||| | |||||||||||||||  |||||    
T  12857561 aaattggtcctcctattttaaaattggacaattttggtctctctatcaaattttttgtctagaatattgtgatatgatatgttttaaatgaagttttcaa 12857462  T
Q  223 gaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacatttaaaa 293  Q
       || ||| || | |||| |||||||||||| |||| ||| ||| | || |||| ||| |||||||||||    
T  12857461 aggaactttattgcaattttattgatgttgatcttttttcatctttagatcatattccatgacatttaaaa 12857391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 176 - 293
Target Start/End: Complemental strand, 15061686 - 15061569
Alignment:
Q  176 tttgtctaaaatatgatgatataacatgttttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcatattat 275  Q
    |||||||| |||||  |||||| | |||||||||||||||  || ||| ||||||| |||| ||||||| |||||||||  |||  || ||||| || ||    
T  15061686 tttgtctagaatattgtgatatgatatgttttaaatgaagtttttaaggaaattttgttacaatttcatcgatgttgatcattttacatcttcagatcat 15061587  T
Q  276 ataccacgacatttaaaa 293  Q
    || | |||||||||||||    
T  15061586 attcaacgacatttaaaa 15061569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 293
Target Start/End: Complemental strand, 44166746 - 44166578
Alignment:
Q  123 aaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgttttaaatgaagcattcaa 222  Q
    |||||||||||  ||||||||||||  |||| ||| |||| | |||| | | |||||||||||||||  |||||| | ||||||||||| |||  || ||    
T  44166746 aaattggtcccactattttaaaattggacaattttgatcc-tgtatcaatttttttgtctaaaatattgtgatatgatatgttttaaataaagtttttaa 44166648  T
Q  223 gaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacatttaaaa 293  Q
    |  |||||| || | |||| || ||||||||| |||| ||| ||||| || |||| |||||| ||||||||    
T  44166647 gggaattttgttgcaattt-atggatgttgatcttttttcatcttcagatcatattccacgatatttaaaa 44166578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 5e-47; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 106 - 297
Target Start/End: Original strand, 43365821 - 43366012
Alignment:
Q  106 attttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgtt 205  Q
    ||||| ||||||||| ||||||||||| | ||||||||||||| |||  |||  | ||| |||||||||||||||||||||||||||||| |||||||||    
T  43365821 atttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattttgtctaaaatatgatgatgtaacatgtt 43365920  T
Q  206 ttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacatttaaaaccta 297  Q
    ||||||||||  || |||  ||||||||||||||||||| |||||| |||||||||||  |||| || ||||||||| ||||||||||||||    
T  43365921 ttaaatgaagtttttaagggaattttcttacgatttcatcgatgtttatattttctcatattcagatcatataccacaacatttaaaaccta 43366012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 123 - 293
Target Start/End: Complemental strand, 12499304 - 12499135
Alignment:
Q  123 aaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgttttaaatgaagcattcaa 222  Q
    |||||||||||| ||||||||||||| |||| |||  ||||| |||| |||||||||||||||||||  || ||| | || ||||||||||||  |||||    
T  12499304 aaattggtccccctattttaaaattcgacaattttggtccctctatcaaatattttgtctaaaatattgtggtatgatat-ttttaaatgaagttttcaa 12499206  T
Q  223 gaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacatttaaaa 293  Q
    |  |||||| |||| ||||||||||||||||| ||||  || |||||||| |||| |||||||||||||||    
T  12499205 gggaattttgttacaatttcattgatgttgatctttttccatcttcatatcatattccacgacatttaaaa 12499135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 166 - 294
Target Start/End: Original strand, 51871683 - 51871810
Alignment:
Q  166 tatctaatattttgtctaaaatatgatgatataacatgttttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcacc 265  Q
    ||||||||| ||| ||||||||||| ||||||||||||||||| ||||||  |  ||| || |||||||||||||||||  ||||||||||||| ||| |    
T  51871683 tatctaataatttatctaaaatatggtgatataacatgttttagatgaagattataaggaa-ttttcttacgatttcatcaatgttgatattttatcatc 51871781  T
Q  266 ttcatattatataccacgacatttaaaac 294  Q
    ||||||| ||||||||||||| |||||||    
T  51871782 ttcatatcatataccacgacagttaaaac 51871810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 106 - 293
Target Start/End: Complemental strand, 1351573 - 1351387
Alignment:
Q  106 attttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgtt 205  Q
    |||||||  ||||||| |||||||||| | ||||||||||||| |||| |||  ||||| |||| ||||||| |||||||||||  |||||| |  ||||    
T  1351573 attttcattattttgtgaaattggtcctcctattttaaaattcaacaattttggtccctctatcaaatattt-gtctaaaatattgtgatatgatttgtt 1351475  T
Q  206 ttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacatttaaaa 293  Q
    |||||||||   |||||| ||||||| |||| ||||||| ||||||||| ||||  || ||||| || |||| |||||| ||||||||    
T  1351474 ttaaatgaatttttcaaggaaattttgttacaatttcatcgatgttgatctttttccatcttcagatcatattccacgatatttaaaa 1351387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 163 - 293
Target Start/End: Complemental strand, 11996401 - 11996270
Alignment:
Q  163 ctttatctaatatttt-gtctaaaatatgatgatataacatgttttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttct 261  Q
    |||||||||||||||| || ||||||||| |||||||||||||||||||| ||   ||||||| |||||| ||||||||| || ||| || |||||||||    
T  11996401 ctttatctaatatttttgtttaaaatatggtgatataacatgttttaaataaaattttcaagagaatttttttacgattttatcgattttcatattttct 11996302  T
Q  262 caccttcatattatataccacgacatttaaaa 293  Q
    || ||||  || ||||||||  ||||||||||    
T  11996301 catcttcgaatcatataccataacatttaaaa 11996270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 106 - 215
Target Start/End: Complemental strand, 44363430 - 44363321
Alignment:
Q  106 attttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgtt 205  Q
    ||||||| |||||||  |||||||||||| ||||||||||||| |||| |||  ||||| |||  |||||||||||||||||||  |||||| | |||||    
T  44363430 attttcatcattttgcgaaattggtccccctattttaaaattcgacaattttggtccctctataaaatattttgtctaaaatattgtgatatgatatgtt 44363331  T
Q  206 ttaaatgaag 215  Q
    ||||||||||    
T  44363330 ttaaatgaag 44363321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 101 - 297
Target Start/End: Original strand, 15562131 - 15562327
Alignment:
Q  101 cccccattttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataac 200  Q
    |||| ||||| | |||||| | |||||| ||||| ||||||||||||  |||  |||  ||||| ||||||||| |||||||||||||   |||||||||    
T  15562131 ccccgatttttatcattttatgaaattgatccccctattttaaaatttgacagttttggtccctctatctaataatttgtctaaaatacagtgatataac 15562230  T
Q  201 atgttttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacatttaaaaccta 297  Q
    ||||||||| |||||  || ||   |||||||||||||||||||  ||||||| ||||| ||| ||| | || |||||  ||||||||  |||||||    
T  15562231 atgttttaattgaagtttttaaatgaattttcttacgatttcatcaatgttgaaattttatcatcttgagatcatatagaacgacattccaaaccta 15562327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 115 - 293
Target Start/End: Original strand, 18879119 - 18879297
Alignment:
Q  115 attttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgttttaaatgaa 214  Q
    |||||| ||||| |||| || ||||||||||||| |||| |||  || || |||  ||||||||||||||||||   |||||| | ||||||||||||||    
T  18879119 attttgcaaaatcggtcgccctattttaaaattcaacaattttggtcactctataaaatattttgtctaaaatactgtgatatgatatgttttaaatgaa 18879218  T
Q  215 gcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacatttaaaa 293  Q
    |   ||||| ||| ||| |||| ||||||| ||||||||| ||||  || ||||| || |||| | ||||||| |||||    
T  18879219 gttatcaaggaaaatttgttacaatttcatcgatgttgatctttttccatcttcagatcatattctacgacatataaaa 18879297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 293
Target Start/End: Complemental strand, 44363124 - 44363032
Alignment:
Q  201 atgttttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacatttaaaa 293  Q
    |||||||||||||||  ||||||  |||||| |||| ||||||| ||  ||||| |||  ||| |||||||| |||| |||||||||||||||    
T  44363124 atgttttaaatgaagttttcaagggaattttgttacaatttcatcgacattgatctttattcatcttcatatcatattccacgacatttaaaa 44363032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 182
Target Start/End: Original strand, 51871598 - 51871674
Alignment:
Q  106 attttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtct 182  Q
    |||||||||||||| | ||||||||| || ||||||||||||  ||| ||||| || || ||||||||| |||||||    
T  51871598 attttcaccattttatgaaattggtctccgtattttaaaatttgacagctttagtctctctatctaataatttgtct 51871674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 101 - 148
Target Start/End: Original strand, 12499032 - 12499079
Alignment:
Q  101 cccccattttcaccattttgtaaaattggtccccttattttaaaattc 148  Q
    |||| ||||||||||||||| | ||||||||||| |||||||||||||    
T  12499032 cccctattttcaccattttgcagaattggtccccctattttaaaattc 12499079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 148
Target Start/End: Original strand, 11996004 - 11996046
Alignment:
Q  106 attttcaccattttgtaaaattggtccccttattttaaaattc 148  Q
    ||||||| | |||||| ||||||||||||||||||||||||||    
T  11996004 attttcatctttttgtgaaattggtccccttattttaaaattc 11996046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 183
Target Start/End: Complemental strand, 6216488 - 6216420
Alignment:
Q  114 cattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtcta 183  Q
    ||||||| ||||||| |||||| |||||||||||  ||||||||  ||||| |||| |||||||||||||    
T  6216488 cattttgcaaaattgttcccct-attttaaaatttgacaactttggtccctctatcaaatattttgtcta 6216420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 148
Target Start/End: Original strand, 6216213 - 6216261
Alignment:
Q  100 tcccccattttcaccattttgtaaaattggtccccttattttaaaattc 148  Q
    ||||| |||||||||| |||| | ||||||||||| |||||||||||||    
T  6216213 tcccctattttcaccactttgcagaattggtccccctattttaaaattc 6216261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 40838086 - 40838042
Alignment:
Q  171 aatattttgtctaaaatatgatgatataacatgttttaaatgaag 215  Q
    ||||||| ||||||||||||||||||| ||| |||| ||||||||    
T  40838086 aatatttagtctaaaatatgatgatatgacaagtttaaaatgaag 40838042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 44362929 - 44362973
Alignment:
Q  101 cccccattttcaccattttgtaaaattggtccccttattttaaaa 145  Q
    |||| ||||||||||||||||| ||||||||||| | ||||||||    
T  44362929 cccctattttcaccattttgtagaattggtccccctgttttaaaa 44362973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 107 - 297
Target Start/End: Complemental strand, 10244595 - 10244405
Alignment:
Q  107 ttttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgttt 206  Q
    ||||||| |||||| ||||||||||||| ||||||||||||  |||  |||  | ||| ||||   ||||||||||||||||||||||||||||||||||    
T  10244595 ttttcactattttgcaaaattggtccccctattttaaaatttgacagttttggttcctatatcatttattttgtctaaaatatgatgatataacatgttt 10244496  T
Q  207 taaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacatttaaaaccta 297  Q
    |||||||||  || ||| || ||||||||||||||||| ||||||||||||||||||  |||| || |||||| | |||||||||||||||    
T  10244495 taaatgaagtttttaaggaagttttcttacgatttcatcgatgttgatattttctcattttcagatcatatactaagacatttaaaaccta 10244405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 101 - 297
Target Start/End: Complemental strand, 28587927 - 28587731
Alignment:
Q  101 cccccattttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataac 200  Q
    |||| ||||||||||||||||||| |||| |||| ||||||||||||| |||  |||  ||||| | | |||||| ||| ||||||||||||||||||||    
T  28587927 cccctattttcaccattttgtaaatttggcccccctattttaaaattcgacagttttggtccctctttataatatcttgactaaaatatgatgatataac 28587828  T
Q  201 atgttttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacatttaaaaccta 297  Q
    |||||||||||||||  || ||   ||||||||| | |||| || ||| || | ||||||||| |||||||| |||| ||| |||||||||||||||    
T  28587827 atgttttaaatgaagtttttaacgtaattttctttcaattttatcgatttttacattttctcatcttcatatcatattccaagacatttaaaaccta 28587731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 106 - 293
Target Start/End: Original strand, 6196722 - 6196909
Alignment:
Q  106 attttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgtt 205  Q
    ||||||| ||||||   |||||||||||| ||||||||||||| |||| |||  ||||| |||| |||||||||||||||||||  ||||||   || ||    
T  6196722 attttcatcattttacgaaattggtccccctattttaaaattcaacaattttggtccctctatcaaatattttgtctaaaatattgtgatatgttatatt 6196821  T
Q  206 ttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacatttaaaa 293  Q
    ||||||||||  ||||||  |||||  |||  |||||||| |||||||| |||| | |   ||| || |||| |||||||||||||||    
T  6196822 ttaaatgaagttttcaagggaatttcgttataatttcattaatgttgatcttttttaatgatcagatcatattccacgacatttaaaa 6196909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 164 - 244
Target Start/End: Complemental strand, 33447011 - 33446931
Alignment:
Q  164 tttatctaatattttgtctaaaatatgatgatataacatgttttaaatgaagcattcaagaaaattttcttacgatttcat 244  Q
    ||||||||||||||||||||||||||| ||||||| |||||||| ||| |||  || ||||||||||  ||||||||||||    
T  33447011 tttatctaatattttgtctaaaatatgttgatatatcatgtttttaattaagtttttaagaaaatttctttacgatttcat 33446931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 292
Target Start/End: Original strand, 12480423 - 12480535
Alignment:
Q  180 tctaaaatatgatgatataacatgttttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatatac 279  Q
    ||||||||||| |||||| | |||||| ||||||||  || ||   |||| ||||||||||||||||| ||||||||||||  | ||||| || ||||||    
T  12480423 tctaaaatatggtgatatgatatgtttaaaatgaagtttttaaaggaattatcttacgatttcattgacgttgatattttcctatcttcaaatcatatac 12480522  T
Q  280 cacgacatttaaa 292  Q
    ||| |||||||||    
T  12480523 cacaacatttaaa 12480535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 215
Target Start/End: Complemental strand, 2237047 - 2236938
Alignment:
Q  106 attttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgtt 205  Q
    ||||||| |||||||  |||||||||||| || ||| |||||  | || ||| |||||| ||||  |||||||||||||||||| ||||||| | || ||    
T  2237047 attttcatcattttgcgaaattggtccccataattttaaattttataattttgatccctctatcacatattttgtctaaaatattatgatatgatatatt 2236948  T
Q  206 ttaaatgaag 215  Q
    ||||||||||    
T  2236947 ttaaatgaag 2236938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 215
Target Start/End: Complemental strand, 4838110 - 4838001
Alignment:
Q  106 attttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgtt 205  Q
    ||||||| |||||||  |||||||||||| |||||||||| |  |||| |||  ||| | |||| |||||||||| ||||||||  |||||| | |||||    
T  4838110 attttcatcattttgcgaaattggtccccctattttaaaagttgacaattttggtccatctatcaaatattttgtttaaaatattgtgatatgatatgtt 4838011  T
Q  206 ttaaatgaag 215  Q
    ||||||||||    
T  4838010 ttaaatgaag 4838001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 148
Target Start/End: Complemental strand, 6198144 - 6198102
Alignment:
Q  106 attttcaccattttgtaaaattggtccccttattttaaaattc 148  Q
    ||||||||||||||||| ||||||||||| |||||||||||||    
T  6198144 attttcaccattttgtagaattggtccccctattttaaaattc 6198102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 286
Target Start/End: Original strand, 33819887 - 33820007
Alignment:
Q  166 tatctaatattttgtctaaaatatgatgatataacatgttttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcacc 265  Q
    |||| |||||||||||||||||||  |||||  | |||||||||||||||  || |||  |||||| |||| ||||||| ||| ||||| ||||  || |    
T  33819887 tatcaaatattttgtctaaaatattgtgatacgatatgttttaaatgaagtttttaagggaattttattacaatttcatcgatattgatctttttccatc 33819986  T
Q  266 ttcatattatataccacgaca 286  Q
    || |||| |||| ||||||||    
T  33819987 tttatatcatattccacgaca 33820007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 213
Target Start/End: Original strand, 35187570 - 35187612
Alignment:
Q  171 aatattttgtctaaaatatgatgatataacatgttttaaatga 213  Q
    ||||||| |||||||||| ||||| ||||||||||||||||||    
T  35187570 aatatttcgtctaaaatacgatgacataacatgttttaaatga 35187612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 148
Target Start/End: Original strand, 28587639 - 28587680
Alignment:
Q  107 ttttcaccattttgtaaaattggtccccttattttaaaattc 148  Q
    |||||||||||||| ||| ||||||||| |||||||||||||    
T  28587639 ttttcaccattttgcaaatttggtccccctattttaaaattc 28587680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 2145556 - 2145600
Alignment:
Q  171 aatattttgtctaaaatatgatgatataacatgttttaaatgaag 215  Q
    ||||||| | ||||||||||||||||| | |||||||||||||||    
T  2145556 aatatttaggctaaaatatgatgatatgatatgttttaaatgaag 2145600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 101 - 297
Target Start/End: Original strand, 13267811 - 13268006
Alignment:
Q  101 cccccattttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataac 200  Q
    |||| ||||| || ||||||||||||||||||||| |||||||||||| |||  |||  ||||| | ||||||||||||| ||||||||| |||||||||    
T  13267811 cccctatttttactattttgtaaaattggtcccct-attttaaaattcgacagttttggtccctctttctaatattttgtttaaaatatggtgatataac 13267909  T
Q  201 atgttttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacatttaaaaccta 297  Q
    |||||||||||||||  |||||   |||||||||| ||||||||||||||||||||||| | | ||| | || ||||| || |||||||||||||||    
T  13267910 atgttttaaatgaagttttcaaaggaattttcttatgatttcattgatgttgatattttattatctttagatcatatatcaagacatttaaaaccta 13268006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 106 - 259
Target Start/End: Original strand, 3207641 - 3207794
Alignment:
Q  106 attttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgtt 205  Q
    ||||||| ||||||  |||||||||| |  ||||||||||||| |||| |||| ||||| |||| |||||||||||||||||||  |||||| | |||||    
T  3207641 attttcatcattttacaaaattggtctctctattttaaaattcgacaattttagtccctctatcaaatattttgtctaaaatattgtgatatgatatgtt 3207740  T
Q  206 ttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatatttt 259  Q
    ||||||||||  |||||  ||||||| |||| ||||||| ||||||||||||||    
T  3207741 ttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttt 3207794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 101 - 297
Target Start/End: Complemental strand, 32089340 - 32089146
Alignment:
Q  101 cccccattttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataac 200  Q
    |||| ||||||| | |||||| |||||||||||| |||||| || ||| |||  |||  || || ||||||||| ||||||| ||||||| |||||||||    
T  32089340 cccctattttcatctttttgtgaaattggtccccctattttgaagttcgacagttttggtctctctatctaataatttgtcttaaatatggtgatataac 32089241  T
Q  201 atgttttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacatttaaaaccta 297  Q
    |||||||||||||||  || | ||||||||| ||||||||||||  ||||||||||||| ||| |||   ||  ||||||| |||||||||||||||    
T  32089240 atgttttaaatgaagtttttatgaaaattttattacgatttcatcaatgttgatattttatcatcttgggat--tataccaagacatttaaaaccta 32089146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 106 - 244
Target Start/End: Original strand, 39186175 - 39186314
Alignment:
Q  106 attttcaccattttgtaaaattggtccccttattttaaaa-ttccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgt 204  Q
    ||||||| ||||||| ||||||||||||| |||||||||| ||| |||| ||| |||||| ||||  ||||||||||||||||||  |||||| | ||||    
T  39186175 attttcatcattttgcaaaattggtccccctattttaaaacttcgacaattttgatccctctatcacatattttgtctaaaatattgtgatatcatatgt 39186274  T
Q  205 tttaaatgaagcattcaagaaaattttcttacgatttcat 244  Q
    |||||||||||  || ||  ||||||| |||| |||||||    
T  39186275 tttaaatgaagtttttaaagaaattttgttacaatttcat 39186314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 100 - 293
Target Start/End: Original strand, 24587104 - 24587296
Alignment:
Q  100 tcccccattttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataa 199  Q
    ||||| ||||| || ||||||||   |||||| || ||||||||||||| |||| |||  ||||| |||| ||||||||||||||||| | ||||||| |    
T  24587104 tcccctatttttactattttgtagttttggtctccatattttaaaattcgacaattttggtccctctatcaaatattttgtctaaaatgttatgatatga 24587203  T
Q  200 catgttttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacatttaaaa 293  Q
     ||||||||||| ||   |||||| ||| ||| |||| ||||||| ||||||||| |||| ||| ||| |  | | ||||||| ||||||||||    
T  24587204 tatgttttaaat-aatgtttcaaggaaagtttgttacaatttcatcgatgttgatcttttttcatctttaggtcacataccaccacatttaaaa 24587296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 101 - 293
Target Start/End: Complemental strand, 20771737 - 20771545
Alignment:
Q  101 cccccattttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataac 200  Q
    |||| ||||||| ||||||| ||||||||||||  ||||||||||||  |||  |||  | ||| |||| || |  |||||||||||||  |||||| |     
T  20771737 cccctattttcatcattttgcaaaattggtccctctattttaaaatttaacatttttggttcctctatcaaaaaaattgtctaaaatattgtgatatgat 20771638  T
Q  201 atgttttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacatttaaaa 293  Q
    ||||||||||||||||  |||||   ||||| |||  ||||||| ||||||||| ||||  || ||| | || |||| | |||||||||||||    
T  20771637 atgttttaaatgaagctatcaaggggattttgttataatttcatcgatgttgatctttttccatctttagatcatattctacgacatttaaaa 20771545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 101 - 293
Target Start/End: Complemental strand, 20781531 - 20781339
Alignment:
Q  101 cccccattttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataac 200  Q
    |||| ||||||| ||||||| ||||||||||||  ||||||||||||  |||  |||  | ||| |||| || |  |||||||||||||  |||||| |     
T  20781531 cccctattttcatcattttgcaaaattggtccctctattttaaaatttaacatttttggttcctctatcaaaaaaattgtctaaaatattgtgatatgat 20781432  T
Q  201 atgttttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacatttaaaa 293  Q
    ||||||||||||||||  |||||   ||||| |||  ||||||| ||||||||| ||||  || ||| | || |||| | |||||||||||||    
T  20781431 atgttttaaatgaagctatcaaggggattttgttataatttcatcgatgttgatctttttccatctttagatcatattctacgacatttaaaa 20781339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0633 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 106 - 297
Target Start/End: Original strand, 8852 - 9043
Alignment:
Q  106 attttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgtt 205  Q
    ||||||| |||||| |||||||| | ||| ||||||||||||| |||  |||  |||| |||  ||||||||| ||||||||||||||| ||||||||||    
T  8852 attttcatcattttataaaattgattcccctattttaaaattcgacagttttggtcccattacataatattttatctaaaatatgatgacataacatgtt 8951  T
Q  206 ttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacatttaaaaccta 297  Q
    ||||||||||  |||||||||||||||||||| ||||   || | |||||||||||||  ||||||| ||||||||||||||| ||||||||    
T  8952 ttaaatgaagttttcaagaaaattttcttacgttttcgccgacgatgatattttctcattttcatatcatataccacgacattcaaaaccta 9043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 4e-35; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 106 - 297
Target Start/End: Complemental strand, 3565677 - 3565486
Alignment:
Q  106 attttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgtt 205  Q
    |||||||| |||||| |||||||||  || | ||||| ||||| |||  |||   |||| ||||||||||||||||||||||||| ||||||||||||||    
T  3565677 attttcactattttgcaaaattggtttccctgttttataattcgacagttttggaccctctatctaatattttgtctaaaatatggtgatataacatgtt 3565578  T
Q  206 ttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacatttaaaaccta 297  Q
    ||||||||||  |||||   ||||||| || |||||||| |||||||||||||||| | ||||| || || ||||||||| |||||||||||    
T  3565577 ttaaatgaagttttcaatgtaattttcctatgatttcatcgatgttgatattttcttatcttcaaatcatctaccacgacgtttaaaaccta 3565486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 162 - 293
Target Start/End: Original strand, 27567407 - 27567538
Alignment:
Q  162 cctttatctaatattttgtctaaaatatgatgatataacatgttttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttct 261  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||     |||||| ||||||||||||||||||||  ||||||||| |||||    
T  27567407 cctttatctaaaattttgtctaaaatatgatgatataacatgttttaaatggtattttcaaggaaattttcttacgatttcatccatgttgatactttct 27567506  T
Q  262 caccttcatattatataccacgacatttaaaa 293  Q
    |  ||||| || |||||| | |||| ||||||    
T  27567507 cgtcttcagatcatatactatgacagttaaaa 27567538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 107 - 293
Target Start/End: Complemental strand, 37327603 - 37327417
Alignment:
Q  107 ttttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgttt 206  Q
    |||||| |||||||  |||||||||||| ||||||||||||  |||| |||  ||||| |||| ||| |||||||||||||||  |||||| | || |||    
T  37327603 ttttcatcattttgcgaaattggtccccctattttaaaattggacaattttggtccctctatcaaattttttgtctaaaatattgtgatatgatatattt 37327504  T
Q  207 taaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacatttaaaa 293  Q
    |||||||||  ||||||| |||||| || | |||| || |||||| || |||| |||  |||| || |||| |||||||||||||||    
T  37327503 taaatgaagttttcaagagaattttgttgcaattttatcgatgttaatcttttttcattttcagatcatattccacgacatttaaaa 37327417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 136 - 297
Target Start/End: Original strand, 45871760 - 45871921
Alignment:
Q  136 tattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgttttaaatgaagcattcaagaaaattttctta 235  Q
    ||||||||||||| |||  |||  ||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||  || ||   ||||||||||    
T  45871760 tattttaaaattcaacagttttggtccctctatataatattttgtctaaaatatggtgatataacatgttttaaatgaagtttttaaagtaattttctta 45871859  T
Q  236 cgatttcattgatgttgatattttctcaccttcatattatataccacgacatttaaaaccta 297  Q
     |||| | | ||| |||| | ||| ||| |||||||| |||| | | |||||||||||||||    
T  45871860 tgattccgtcgatattgagactttttcatcttcatatcatattctaagacatttaaaaccta 45871921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 107 - 215
Target Start/End: Complemental strand, 26472110 - 26472004
Alignment:
Q  107 ttttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgttt 206  Q
    |||||||||||||  ||| ||||||||||   |||||||||| |||  ||| |||||||||| |||||||||| ||||||||||||||||||| || |||    
T  26472110 ttttcaccattttccaaatttggtccccta--tttaaaattcgacagttttgatccctttatataatattttgactaaaatatgatgatataatatattt 26472013  T
Q  207 taaatgaag 215  Q
    |||||||||    
T  26472012 taaatgaag 26472004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 107 - 215
Target Start/End: Complemental strand, 26548550 - 26548444
Alignment:
Q  107 ttttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgttt 206  Q
    |||||||||||||  ||| ||||||||||   |||||||||| |||  ||| |||||||||| |||||||||| ||||||||||||||||||| || |||    
T  26548550 ttttcaccattttccaaatttggtccccta--tttaaaattcgacagttttgatccctttatataatattttgactaaaatatgatgatataatatattt 26548453  T
Q  207 taaatgaag 215  Q
    |||||||||    
T  26548452 taaatgaag 26548444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 170 - 271
Target Start/End: Complemental strand, 40717686 - 40717585
Alignment:
Q  170 taatattttgtctaaaatatgatgatataacatgttttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttca 269  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||  || || | |||||||||  ||||||||  ||||||| ||||||||| |||||    
T  40717686 taatattttatctaaaatatgatgatataacatgttttaaataaagtttttaatagaattttctttagatttcatcaatgttgacattttctcatcttca 40717587  T
Q  270 ta 271  Q
    ||    
T  40717586 ta 40717585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 166 - 293
Target Start/End: Complemental strand, 29366598 - 29366471
Alignment:
Q  166 tatctaatattttgtctaaaatatgatgatataacatgttttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcacc 265  Q
    |||| |||||||||||||||||||  |||||| | ||||||||||| |||  ||||| | |||||| |||| ||||||| |||||||||| ||| ||| |    
T  29366598 tatcaaatattttgtctaaaatattgtgatatgatatgttttaaataaagttttcaacataattttgttacaatttcatcgatgttgataatttttcatc 29366499  T
Q  266 ttcatattatataccacgacatttaaaa 293  Q
    |||| || |||| ||| |||||||||||    
T  29366498 ttcaaatcatattccatgacatttaaaa 29366471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 134 - 254
Target Start/End: Original strand, 17298691 - 17298811
Alignment:
Q  134 cttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgttttaaatgaagcattcaagaaaattttct 233  Q
    ||||||||||||||  |||||| | ||| || |||| ||||||| ||||||||||||| | ||| ||||||||| |||||||  |  ||| || ||||||    
T  17298691 cttattttaaaatttgacaactctgatctctctatcaaatatttggtctaaaatatgaaggtatgacatgttttgaatgaagtttgtaagcaagttttct 17298790  T
Q  234 tacgatttcattgatgttgat 254  Q
    ||| ||||||||||| |||||    
T  17298791 tacaatttcattgatattgat 17298811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 106 - 293
Target Start/End: Original strand, 20896288 - 20896477
Alignment:
Q  106 attttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatat--tttgtctaaaatatgatgatataacatg 203  Q
    |||||||  ||||| | ||||||||| |  ||||||||||||| | || |||  ||||| ||||  ||||  ||||||||||||||  |||||| | |||    
T  20896288 attttcataattttatgaaattggtcgcactattttaaaattcgataattttggtccctctatcacatataatttgtctaaaatattgtgatatgatatg 20896387  T
Q  204 ttttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacatttaaaa 293  Q
    ||||||||||||  || ||  ||||||| |||| ||||||| ||||||||||||||   | ||||| || |||| ||| |||||||||||    
T  20896388 ttttaaatgaagtttttaaagaaattttgttacaatttcatcgatgttgatatttttctatcttcacatcatattccatgacatttaaaa 20896477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 235 - 293
Target Start/End: Original strand, 27569363 - 27569421
Alignment:
Q  235 acgatttcattgatgttgatattttctcaccttcatattatataccacgacatttaaaa 293  Q
    |||||||||| |||||||||||||||||  ||||| || ||||||||||||||||||||    
T  27569363 acgatttcatcgatgttgatattttctcgtcttcagatcatataccacgacatttaaaa 27569421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 127 - 293
Target Start/End: Complemental strand, 46303847 - 46303682
Alignment:
Q  127 tggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgttttaaatgaagcattcaagaaa 226  Q
    |||||| | ||||||||||||| |||| |||  ||||| ||||  || |||| ||||||||||  |||| | | |||||||||||||||  || |||| |    
T  46303847 tggtcctcctattttaaaattcgacaattttggtccctctatcatatgttttatctaaaatattgtgatgtgatatgttttaaatgaagtttt-aagata 46303749  T
Q  227 attttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacatttaaaa 293  Q
    ||||| ||||  |||||| ||||||||| ||||   | |||||||| |||| |||||||||||||||    
T  46303748 attttgttacagtttcatcgatgttgatctttttctatcttcatatcatattccacgacatttaaaa 46303682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 213
Target Start/End: Original strand, 39751209 - 39751307
Alignment:
Q  115 attttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgttttaaatga 213  Q
    |||||| |||||||||||||  |||||||||||| |||| |||  ||| |  ||| |||||||||| ||||||||| |||||  |||| ||||||||||    
T  39751209 attttgcaaaattggtccccccattttaaaattctacaattttggtccttccatcaaatattttgtttaaaatatggtgatacgacatattttaaatga 39751307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 171 - 291
Target Start/End: Original strand, 23415976 - 23416094
Alignment:
Q  171 aatattttgtctaaaatatgatgatataacatgttttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcat 270  Q
    ||||||||||||||||||   |||||| |  ||||||||||||||  || ||||||||||| |||  ||||||| |||||||| |||||  || | |||     
T  23415976 aatattttgtctaaaatactgtgatatga--tgttttaaatgaagtttttaagaaaattttgttataatttcatcgatgttgaaatttttccatcatcag 23416073  T
Q  271 attatataccacgacatttaa 291  Q
    ||||||| ||| |||||||||    
T  23416074 attatattccatgacatttaa 23416094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 106 - 215
Target Start/End: Complemental strand, 40744691 - 40744582
Alignment:
Q  106 attttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgtt 205  Q
    |||||||||||||| | |||||| || || | |||||||||| || |  ||| | || || ||| ||||||| || ||||||||| |||||| |||||||    
T  40744691 attttcaccattttatgaaattgatctccctgttttaaaatttcaaaggtttgaccctttcatcaaatatttggtttaaaatatggtgatatgacatgtt 40744592  T
Q  206 ttaaatgaag 215  Q
    ||||||||||    
T  40744591 ttaaatgaag 40744582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 171 - 214
Target Start/End: Complemental strand, 11752953 - 11752910
Alignment:
Q  171 aatattttgtctaaaatatgatgatataacatgttttaaatgaa 214  Q
    ||||||||||||||| |||  |||||||||||||||||||||||    
T  11752953 aatattttgtctaaattatagtgatataacatgttttaaatgaa 11752910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 101 - 148
Target Start/End: Original strand, 29366368 - 29366415
Alignment:
Q  101 cccccattttcaccattttgtaaaattggtccccttattttaaaattc 148  Q
    |||| |||||||| |||||| ||||||||||||| |||||||||||||    
T  29366368 cccctattttcacaattttgcaaaattggtccccatattttaaaattc 29366415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 236
Target Start/End: Original strand, 44857848 - 44857969
Alignment:
Q  114 cattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgttttaaatga 213  Q
    |||||||  |||||| ||||| ||||| ||||||| |||| |||  |||||  ||| ||||||| |||||||||||  |||| | | |||||||||||||    
T  44857848 cattttgcgaaattgatccccctattt-aaaattcgacaattttgttccctccatcaaatatttagtctaaaatattgtgatttgatatgttttaaatga 44857946  T
Q  214 agcattcaagaaaattttcttac 236  Q
    ||  |||||| ||||||| ||||    
T  44857947 agttttcaaggaaattttgttac 44857969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 165
Target Start/End: Original strand, 42055302 - 42055366
Alignment:
Q  100 tcccccattttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctt 165  Q
    ||||| ||||| ||||||||||| ||||||| ||||||||||||||||  |||  |||||||||||    
T  42055302 tcccctatttttaccattttgtagaattggt-cccttattttaaaatttgacagttttaatccctt 42055366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 37327314 - 37327366
Alignment:
Q  101 cccccattttcaccattttgtaaaattggtccccttattttaaaattccacaa 153  Q
    |||| ||||||||||||||| | || |||||||| ||||||||||||| ||||    
T  37327314 cccctattttcaccattttgcagaaatggtccccctattttaaaattcgacaa 37327366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 6e-34; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 116 - 293
Target Start/End: Complemental strand, 40324543 - 40324366
Alignment:
Q  116 ttttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgttttaaatgaag 215  Q
    |||||||||||| ||| || ||||||||||||| |||  ||| |||  | |||||||  ||||||||||||||||||||||||||| ||||||||||  |    
T  40324543 ttttgtaaaattagtctccctattttaaaattcgacagttttgatcattctatctaaatttttgtctaaaatatgatgatataacaagttttaaatggtg 40324444  T
Q  216 cattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacatttaaaa 293  Q
      ||||||| |||||||||| |||||||| |||||||||||||||||  ||||  || ||||| ||||||||||||||    
T  40324443 ttttcaagagaattttcttatgatttcatcgatgttgatattttctcgtcttccgatcatatatcacgacatttaaaa 40324366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 106 - 293
Target Start/End: Complemental strand, 39741574 - 39741387
Alignment:
Q  106 attttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgtt 205  Q
    ||||||| |||||||| || ||| || |||||||||||||||| | || ||| |||||| |||| |||||||||||||||||||  |||||| | |||||    
T  39741574 attttcatcattttgtgaatttgatctccttattttaaaattcgataattttgatccctctatcaaatattttgtctaaaatattgtgatatgatatgtt 39741475  T
Q  206 ttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacatttaaaa 293  Q
    ||||||||||  ||||||  |||||  |||  ||||||| ||||||||| |||| ||| ||||| || ||||  ||||| ||||||||    
T  39741474 ttaaatgaagttttcaagggaatttcgttataatttcatcgatgttgatcttttttcatcttcagatcatatttcacgatatttaaaa 39741387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 115 - 293
Target Start/End: Original strand, 5548120 - 5548298
Alignment:
Q  115 attttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgttttaaatgaa 214  Q
    ||||||| |||||||||||  ||||||||||||| |||| |||  |||||||||| |||||||||||||||||||   ||| | | ||||||||||||||    
T  5548120 attttgttaaattggtccctctattttaaaattcgacaattttggtccctttatcaaatattttgtctaaaatattgagatgtgatatgttttaaatgaa 5548219  T
Q  215 gcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacatttaaaa 293  Q
       || |||||||||||  ||| ||||||| ||||||||| |||| | | ||||| || |||| ||| |||||||||||    
T  5548220 atttttaagaaaattttgatacaatttcatcgatgttgatttttttttaacttcagatgatattccatgacatttaaaa 5548298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 106 - 259
Target Start/End: Complemental strand, 13639672 - 13639519
Alignment:
Q  106 attttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgtt 205  Q
    ||||||| ||||||| ||||||||||||| ||||||||||||| | || |||  ||||| ||||  ||||||||||||||||||  |||||| | |||||    
T  13639672 attttcatcattttgcaaaattggtccccctattttaaaattctaaaattttggtccctctatcatatattttgtctaaaatattgtgatatgatatgtt 13639573  T
Q  206 ttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatatttt 259  Q
    ||||||||||  || ||||  ||||| |||| |||| || ||||||||||||||    
T  13639572 ttaaatgaagtttttaagagcattttgttacaattttatcgatgttgatatttt 13639519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 107 - 293
Target Start/End: Original strand, 30223807 - 30223992
Alignment:
Q  107 ttttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgttt 206  Q
    |||||| |||||||  |||||||||||   ||||| |||||| |||  |||  ||| | |||| |||||||||||||||||||  | |||| | ||||||    
T  30223807 ttttcatcattttgcgaaattggtccctcaatttttaaattcgacagttttggtccatctatcaaatattttgtctaaaatattgttatatca-atgttt 30223905  T
Q  207 taaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacatttaaaa 293  Q
    |||||||||  |||||   |||||| |||| |||||||  ||||| ||||||| ||| ||||| || |||| |||||||||||||||    
T  30223906 taaatgaagttttcaatggaattttgttacaatttcatccatgttaatattttttcatcttcagatcatattccacgacatttaaaa 30223992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 114 - 251
Target Start/End: Original strand, 3577572 - 3577708
Alignment:
Q  114 cattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgttttaaatga 213  Q
    ||||||| ||||||||||  | ||||||||||||| |||| |||  | ||| |||| ||||||||||||||||| |  |||||| | |||||||||||||    
T  3577572 cattttgcaaaattggtcttcctattttaaaattcgacaattttggtacctctatcaaatattttgtctaaaattttgtgatatgatatgttttaaatga 3577671  T
Q  214 agcattcaagaaaattttcttacgatttcattgatgtt 251  Q
    ||  ||||||  |||||| |||| ||||||| ||||||    
T  3577672 agttttcaag-gaattttgttacaatttcatcgatgtt 3577708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 137 - 293
Target Start/End: Complemental strand, 14626503 - 14626347
Alignment:
Q  137 attttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgttttaaatgaagcattcaagaaaattttcttac 236  Q
    |||||||||| | |||| ||| || ||| ||||  |||||||||||||||||   |||||| | |||||||||||||||  || ||   |||||| |||     
T  14626503 attttaaaatccgacaattttgattcctctatcacatattttgtctaaaatactgtgatatgatatgttttaaatgaagtttttaaaggaattttgttat 14626404  T
Q  237 gatttcattgatgttgatattttctcaccttcatattatataccacgacatttaaaa 293  Q
     ||||||| ||||||||| |||||  | |||||||| |||| |||||||||||||||    
T  14626403 aatttcatcgatgttgatcttttcctatcttcatatcatattccacgacatttaaaa 14626347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 106 - 214
Target Start/End: Original strand, 13361006 - 13361114
Alignment:
Q  106 attttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgtt 205  Q
    |||||||  ||||||  |||||| || |||||||||||||||| |||| ||| ||| || ||||  ||||||||||||||||||  |||||  | |||||    
T  13361006 attttcattattttgcgaaattgatctccttattttaaaattcgacaattttgatctctctatcacatattttgtctaaaatattgtgatacgatatgtt 13361105  T
Q  206 ttaaatgaa 214  Q
    |||||||||    
T  13361106 ttaaatgaa 13361114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 196
Target Start/End: Original strand, 42552562 - 42552652
Alignment:
Q  106 attttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgata 196  Q
    ||||||||||||||||| ||||||||||  ||||||||||||| |||  | | ||| |  || |  |||||||||||||||||||||||||    
T  42552562 attttcaccattttgtagaattggtccctgtattttaaaattcgacagttctgatctccctaacacatattttgtctaaaatatgatgata 42552652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 211
Target Start/End: Original strand, 39917416 - 39917520
Alignment:
Q  107 ttttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgttt 206  Q
    ||||||| ||||| |||||||||| || ||||||| ||| || |||  |||  |||||  ||| |||||||| ||||||||| | | |||||||||||||    
T  39917416 ttttcacaattttataaaattggttcctttattttcaaactcgacactttttgtccctcgatcaaatattttatctaaaatacggttatataacatgttt 39917515  T
Q  207 taaat 211  Q
    |||||    
T  39917516 taaat 39917520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 3577832 - 3577791
Alignment:
Q  106 attttcaccattttgtaaaattggtccccttattttaaaatt 147  Q
    ||||||||||||||| | ||||||||||| ||||||||||||    
T  3577832 attttcaccattttgaagaattggtccccctattttaaaatt 3577791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 37510290 - 37510339
Alignment:
Q  166 tatctaatattttgtctaaaatatgatgatataacatgttttaaatgaag 215  Q
    |||| ||||||  ||||||||||||||||||| |||||||||| ||||||    
T  37510290 tatcaaatattaggtctaaaatatgatgatatgacatgttttatatgaag 37510339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 101 - 293
Target Start/End: Original strand, 38216098 - 38216291
Alignment:
Q  101 cccccattttcaccattttgtaaaattggtcccct-tattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataa 199  Q
    |||| ||||||  |||||||| ||||||||||||  ||||||||||||| |||| |||  || || |||| |||||||||||||||||||  |||||| |    
T  38216098 cccctattttcttcattttgtgaaattggtcccccctattttaaaattcgacaattttggtcgctctatcaaatattttgtctaaaatattgtgatatga 38216197  T
Q  200 catgttttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacatttaaaa 293  Q
     ||||||||||| |||  ||||||| |||||| |||| ||||||||||||||||| ||||  || |||||||| |||| |||| ||||||||||    
T  38216198 tatgttttaaataaagttttcaagagaattttgttacaatttcattgatgttgatttttttccatcttcatatcatattccacaacatttaaaa 38216291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 106 - 293
Target Start/End: Original strand, 39492307 - 39492494
Alignment:
Q  106 attttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgtt 205  Q
    ||||||| ||||||| ||||||||||||| |||| |||||||| ||||  ||  ||||| |||| |||||||||||||||||||  |||||| | |||||    
T  39492307 attttcatcattttgcaaaattggtccccctattataaaattcgacaatgttggtccctctatcaaatattttgtctaaaatattgtgatatgatatgtt 39492406  T
Q  206 ttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacatttaaaa 293  Q
    | ||||||||  ||||||  |||||| |||| | |||||  |||||||| ||||  || ||||| ||||||| ||| |||||||||||    
T  39492407 tcaaatgaagttttcaagggaattttgttacaacttcatcaatgttgatcttttaccatcttcaaattatattccatgacatttaaaa 39492494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 114 - 293
Target Start/End: Complemental strand, 43071839 - 43071662
Alignment:
Q  114 cattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgttttaaatga 213  Q
    |||||||| ||||||||||   ||||||||||||| |||| |||  ||| | |||| ||||||  |||||||||||  |||||| | |||||||||| ||    
T  43071839 cattttgtgaaattggtccatctattttaaaattcgacaattttggtccttctatcaaatatt--gtctaaaatattgtgatatgatatgttttaaacga 43071742  T
Q  214 agcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacatttaaaa 293  Q
    ||  ||||||| |||||| |||| ||||||| |||||| || ||||  || ||||| || |||| |||||||||||||||    
T  43071741 agttttcaagagaattttgttacaatttcatcgatgttaatctttttccatcttcaaatcatattccacgacatttaaaa 43071662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 166 - 293
Target Start/End: Complemental strand, 49726649 - 49726522
Alignment:
Q  166 tatctaatattttgtctaaaatatgatgatataacatgttttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcacc 265  Q
    |||| ||||||||||  | |||||  |||||| | || ||||||||||||  |||||||||||||| |||| ||||||| ||||||||| ||||  || |    
T  49726649 tatcaaatattttgtacagaatattgtgatatgatatattttaaatgaagttttcaagaaaattttgttacaatttcatcgatgttgatctttttacatc 49726550  T
Q  266 ttcatattatataccacgacatttaaaa 293  Q
    |||| ||||||| |||||||||||||||    
T  49726549 ttcaaattatattccacgacatttaaaa 49726522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 106 - 259
Target Start/End: Complemental strand, 14742259 - 14742110
Alignment:
Q  106 attttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgtt 205  Q
    ||||||| |||||||  |||||||||||| ||||||||||||| |||| |||  ||||| |||| ||||  |||||||||||||  ||||||    ||||    
T  14742259 attttcatcattttgcgaaattggtccccctattttaaaattcgacaattttggtccctctatcaaata--ttgtctaaaatattgtgatat--gttgtt 14742164  T
Q  206 ttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatatttt 259  Q
    ||||||||||  ||||||  |||||  |||| |||| || ||||||||| ||||    
T  14742163 ttaaatgaagttttcaagggaatttcgttacaattttatcgatgttgatttttt 14742110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 101 - 148
Target Start/End: Complemental strand, 38216394 - 38216347
Alignment:
Q  101 cccccattttcaccattttgtaaaattggtccccttattttaaaattc 148  Q
    |||| ||||||||||||||| | ||||||||||| |||||||||||||    
T  38216394 cccctattttcaccattttgcataattggtccccctattttaaaattc 38216347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 147
Target Start/End: Original strand, 39450637 - 39450683
Alignment:
Q  101 cccccattttcaccattttgtaaaattggtccccttattttaaaatt 147  Q
    |||| ||||||||||||||| | ||||||||||| ||||||||||||    
T  39450637 cccctattttcaccattttgcagaattggtccccctattttaaaatt 39450683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 251
Target Start/End: Original strand, 3979055 - 3979127
Alignment:
Q  179 gtctaaaatatgatgatataacatgttttaaatgaagcattcaagaaaattttcttacgatttcattgatgtt 251  Q
    |||||||||||  |||||| ||||||||||||||| |  || |||||| ||||||||| |||  |||||||||    
T  3979055 gtctaaaatatcctgatatgacatgttttaaatgatgtttttaagaaatttttcttacaattaaattgatgtt 3979127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 123 - 293
Target Start/End: Original strand, 21173 - 21342
Alignment:
Q  123 aaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgttttaaatgaagcattcaa 222  Q
    |||||||||||| ||||||||||||| |||| |||  ||||| |||| |||||||||||||||||||  || ||| | || ||||||||||||  |||||    
T  21173 aaattggtccccctattttaaaattcgacaattttggtccctctatcaaatattttgtctaaaatattgtggtatgatat-ttttaaatgaagttttcaa 21271  T
Q  223 gaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacatttaaaa 293  Q
    |  |||||| |||| ||||||||||||||||| ||||  || |||||||| |||| |||||||||||||||    
T  21272 gggaattttgttacaatttcattgatgttgatctttttccatcttcatatcatattccacgacatttaaaa 21342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 101 - 148
Target Start/End: Complemental strand, 21445 - 21398
Alignment:
Q  101 cccccattttcaccattttgtaaaattggtccccttattttaaaattc 148  Q
    |||| ||||||||||||||| | ||||||||||| |||||||||||||    
T  21445 cccctattttcaccattttgcagaattggtccccctattttaaaattc 21398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 106 - 259
Target Start/End: Complemental strand, 17835 - 17682
Alignment:
Q  106 attttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgtt 205  Q
    ||||||| |||||||||||||||||| |  | |||||||||||||||| |||  ||  | |||| |||||||||||||||||||  |||||| | |||||    
T  17835 attttcatcattttgtaaaattggtctctctgttttaaaattccacaattttggtcattctatcaaatattttgtctaaaatattgtgatatgatatgtt 17736  T
Q  206 ttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatatttt 259  Q
    ||||||||||  ||||||| | |||| |||| ||||||| ||||||||| ||||    
T  17735 ttaaatgaagttttcaagatagttttattaccatttcatcgatgttgatctttt 17682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 259
Target Start/End: Original strand, 20253 - 20393
Alignment:
Q  114 cattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgttttaaatga 213  Q
    ||||||| ||||||| || ||||||||| |||||| | || |||  ||| | |||| |||||||||||||||||||  ||||     |||||||||||||    
T  20253 cattttgcaaaattgatctccttatttttaaattcgataattttggtccttctatcaaatattttgtctaaaatattgtgat-----atgttttaaatga 20347  T
Q  214 agcattcaagaaaattttcttacgatttcattgatgttgatatttt 259  Q
    |   |||||  ||||||| |||| |||||||  |||||||| ||||    
T  20348 aattttcaatgaaattttgttacaatttcatcaatgttgatctttt 20393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 259
Target Start/End: Original strand, 30421 - 30561
Alignment:
Q  114 cattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgttttaaatga 213  Q
    ||||||| ||||||| || ||||||||| |||||| | || |||  ||| | |||| |||||||||||||||||||  ||||     |||||||||||||    
T  30421 cattttgcaaaattgatctccttatttttaaattcgataattttggtccttctatcaaatattttgtctaaaatattgtgat-----atgttttaaatga 30515  T
Q  214 agcattcaagaaaattttcttacgatttcattgatgttgatatttt 259  Q
    |   |||||  ||||||| |||| |||||||  |||||||| ||||    
T  30516 aattttcaatgaaattttgttacaatttcatcaatgttgatctttt 30561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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