View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14520_low_11 (Length: 336)

Name: NF14520_low_11
Description: NF14520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14520_low_11
NF14520_low_11
[»] chr2 (2 HSPs)
chr2 (57-209)||(16428818-16428977)
chr2 (280-330)||(28603064-28603114)
[»] chr1 (1 HSPs)
chr1 (108-209)||(13248707-13248808)
[»] chr6 (1 HSPs)
chr6 (108-209)||(11015202-11015303)
[»] chr3 (3 HSPs)
chr3 (53-210)||(23431136-23431293)
chr3 (149-209)||(4501060-4501121)
chr3 (150-209)||(27900469-27900529)
[»] chr8 (1 HSPs)
chr8 (149-209)||(9907126-9907187)
[»] scaffold0426 (1 HSPs)
scaffold0426 (149-209)||(2493-2553)


Alignment Details
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 57 - 209
Target Start/End: Original strand, 16428818 - 16428977
Alignment:
Q  57 ctgtcaaatctctgtttatttatcgtattattgtccgaataggtttttatcacaaacaatca-------tttaaaccctaacttaaaatcatgattaaag 149  Q
    ||||||||||||||||||||||||| ||||| ||  ||||||||||||||| ||||||||||        ||||||| ||||||||||| ||||||||||    
T  16428818 ctgtcaaatctctgtttatttatcgcattatagtatgaataggtttttatcgcaaacaatcaataggttattaaaccttaacttaaaatgatgattaaag 16428917  T
Q  150 ttgaacggcttataatatctcacgagtccttgtcgaaacgatacaaaaatacttactttt 209  Q
    || |||  ||||| ||||| ||| ||||| ||| |||| ||||||  |||||||||||||    
T  16428918 ttaaacaacttatgatatcgcactagtccctgtggaaatgatacacgaatacttactttt 16428977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 330
Target Start/End: Complemental strand, 28603114 - 28603064
Alignment:
Q  280 aacaattattgtaagaccttgaccacggtacattaccggtaaggtactcct 330  Q
    |||||||||| || |||||||| ||||||||||||||||||||||||||||    
T  28603114 aacaattattttatgaccttgatcacggtacattaccggtaaggtactcct 28603064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 108 - 209
Target Start/End: Complemental strand, 13248808 - 13248707
Alignment:
Q  108 acaaacaatcatttaaaccctaacttaaaatcatgattaaagttgaacggcttataatatctcacgagtccttgtcgaaacgatacaaaaatacttactt 207  Q
    |||||||||||   |||||||||||||| || || || || ||||||||  |||||||||  ||| ||||||||| ||||||||||||||||||||||||    
T  13248808 acaaacaatcaaccaaaccctaacttaagatgataatcaatgttgaacgatttataatattgcactagtccttgtggaaacgatacaaaaatacttactt 13248709  T
Q  208 tt 209  Q
    ||    
T  13248708 tt 13248707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 209
Target Start/End: Complemental strand, 11015303 - 11015202
Alignment:
Q  108 acaaacaatcatttaaaccctaacttaaaatcatgattaaagttgaacggcttataatatctcacgagtccttgtcgaaacgatacaaaaatacttactt 207  Q
    |||||||| || ||||||||||||||||||| || ||  | ||||||||| |||| ||||| ||| ||||| ||  || |||||| ||||||||||||||    
T  11015303 acaaacaaccaattaaaccctaacttaaaatgataatcgatgttgaacggtttatgatatcgcactagtccctgaggagacgatataaaaatacttactt 11015204  T
Q  208 tt 209  Q
    ||    
T  11015203 tt 11015202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 210
Target Start/End: Original strand, 23431136 - 23431293
Alignment:
Q  53 gtctctgtcaaatctctgtttatttatcgtattattgtccgaataggtttttatcacaaacaatcatttaaaccct-aacttaaaatcatgattaaagtt 151  Q
    ||||||||| ||||||  |||||||| || || || || | ||||| |||| || ||||| |||| | |||||||| |||||| ||| || || |  |||    
T  23431136 gtctctgtccaatctcgttttatttaccgcataatagttcaaatag-ttttcataacaaagaatcttataaacccttaacttagaatgataatcattgtt 23431234  T
Q  152 gaacggcttataatatctcacgagtccttgtcgaaacgatacaaaaatacttacttttt 210  Q
    ||| ||||||||||||| ||| ||||| ||| |||||||||  ||||||||||||||||    
T  23431235 gaatggcttataatatcgcactagtccatgtggaaacgatattaaaatacttacttttt 23431293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 209
Target Start/End: Complemental strand, 4501121 - 4501060
Alignment:
Q  149 gttgaacggcttataatatctcacgagtccttgtcgaaacgat-acaaaaatacttactttt 209  Q
    ||||||||||||| |||||| ||| ||||| ||| || ||||| ||||||||||||||||||    
T  4501121 gttgaacggcttagaatatcgcactagtccatgtggagacgataacaaaaatacttactttt 4501060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 209
Target Start/End: Complemental strand, 27900529 - 27900469
Alignment:
Q  150 ttgaacggcttataatatctcacgagtccttgtcgaaacgat-acaaaaatacttactttt 209  Q
    |||||||||||| |||||| ||| ||||| ||| |||||||| ||| ||||||||||||||    
T  27900529 ttgaacggcttagaatatcgcaccagtccatgtggaaacgataacataaatacttactttt 27900469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 149 - 209
Target Start/End: Original strand, 9907126 - 9907187
Alignment:
Q  149 gttgaacggcttataatatctcacgagtccttgtcgaaacgat-acaaaaatacttactttt 209  Q
    |||||||||||||||||||| ||| ||||| ||| || ||||| ||||||||||||||||||    
T  9907126 gttgaacggcttataatatcgcaccagtccatgtggagacgataacaaaaatacttactttt 9907187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0426 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0426
Description:

Target: scaffold0426; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 209
Target Start/End: Original strand, 2493 - 2553
Alignment:
Q  149 gttgaacggcttataatatctcacgagtccttgtcgaaacgatacaaaaatacttactttt 209  Q
    |||||||| | ||||||||| ||  ||||| ||| ||||||||||| ||||||||||||||    
T  2493 gttgaacgacctataatatcgcattagtccctgttgaaacgatacacaaatacttactttt 2553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University