View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14520_low_2 (Length: 546)
Name: NF14520_low_2
Description: NF14520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14520_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 1 - 528
Target Start/End: Complemental strand, 2207574 - 2207047
Alignment:
| Q |
1 |
tcaactatccttgtcgatgtgacgatatttttggtgtgtttacagtaactagttgtgtaagcactttaaattttgaggtctaccttgttaactgatacaa |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2207574 |
tcaactatccttgtcgatgtgatgatatttttggtgtgtttacagtaactagttgtgtaagcactttaaattttgaggtctaccttgttaactgatacaa |
2207475 |
T |
|
| Q |
101 |
tgacaacaacaacatcaacatcatatgttcgtgacgcatatgatgatcccgtaaatgacatatatgatgatctccttcaagatgaaaaacgataacccat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2207474 |
tgacaacaacaacatcaacatcatatgttcgtgacgcatatgatgatcccgtaaatgacatatatgatgatctccttcaagatgaaaaacgataacccat |
2207375 |
T |
|
| Q |
201 |
cagtggagacatgaagtactgaggtcgtatttcatgacaaaaacaatttaaccctattttatattttgtctaatatcaacaagttaccagttaggactag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2207374 |
cagtggagacatgaagtactgaggtcgtatttcatgacaaaaacaatttaaccctattttatattttgtctaatatcaacaagttaccagttaggactag |
2207275 |
T |
|
| Q |
301 |
aaacccactccacacatgaatgaccatacaactaaaactcattttattctagccaggtcatggcctaccggtacatgtagatgcacaataaaaaagagct |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2207274 |
aaacccactccacacatgaatgaccatacaactaaaactcattttattctagccaggtcatggcctaccggtacatgtagatgcacaataaaaaagagct |
2207175 |
T |
|
| Q |
401 |
tttatatttggctcaattgtaaattgtaccttgtatccgaatttaacatgacttccatgatacgagacactgcttgagtatgactcaatatctactggaa |
500 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2207174 |
tttatatttggctccattgtaaattttaccttgtatccgaatttaacatgacttccatgatacgagacactgcttgagtatgactcaatatctactggaa |
2207075 |
T |
|
| Q |
501 |
caagagttgaataattatcttctggtgt |
528 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
2207074 |
caagagttgaataattatcttctggtgt |
2207047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University