View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14520_low_21 (Length: 243)

Name: NF14520_low_21
Description: NF14520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14520_low_21
NF14520_low_21
[»] scaffold0024 (1 HSPs)
scaffold0024 (132-243)||(143977-144088)
[»] chr7 (22 HSPs)
chr7 (140-243)||(24840069-24840175)
chr7 (130-243)||(8916434-8916550)
chr7 (138-243)||(1369729-1369837)
chr7 (130-243)||(1786599-1786715)
chr7 (130-239)||(11000887-11000999)
chr7 (130-243)||(11228897-11229013)
chr7 (130-243)||(27142582-27142698)
chr7 (164-243)||(1874490-1874570)
chr7 (135-198)||(8063901-8063964)
chr7 (155-243)||(4888742-4888834)
chr7 (135-235)||(1690196-1690299)
chr7 (135-243)||(6451807-6451918)
chr7 (157-198)||(35814814-35814855)
chr7 (155-243)||(3778765-3778862)
chr7 (138-194)||(4133398-4133454)
chr7 (151-243)||(1365608-1365704)
chr7 (130-242)||(5934520-5934635)
chr7 (158-198)||(4955969-4956009)
chr7 (130-198)||(11228636-11228704)
chr7 (155-239)||(30217754-30217843)
chr7 (159-193)||(8915279-8915313)
chr7 (151-198)||(19404214-19404262)
[»] chr4 (15 HSPs)
chr4 (130-243)||(7633996-7634112)
chr4 (159-243)||(10494848-10494935)
chr4 (139-196)||(13991486-13991543)
chr4 (130-198)||(3765312-3765380)
chr4 (138-194)||(17255007-17255063)
chr4 (156-243)||(22486833-22486921)
chr4 (157-230)||(28897913-28897990)
chr4 (157-243)||(13990734-13990823)
chr4 (170-241)||(15848361-15848435)
chr4 (130-198)||(21433668-21433735)
chr4 (138-239)||(40206072-40206177)
chr4 (159-193)||(7635235-7635269)
chr4 (167-243)||(18657099-18657178)
chr4 (167-243)||(18689578-18689657)
chr4 (156-243)||(9260515-9260605)
[»] chr2 (15 HSPs)
chr2 (155-243)||(23457587-23457678)
chr2 (156-243)||(33051560-33051650)
chr2 (154-239)||(4184868-4184957)
chr2 (158-243)||(32162026-32162115)
chr2 (135-243)||(21772295-21772407)
chr2 (159-243)||(28737782-28737870)
chr2 (138-198)||(1218392-1218452)
chr2 (130-243)||(5171642-5171758)
chr2 (155-239)||(12966417-12966505)
chr2 (130-198)||(32163876-32163944)
chr2 (155-243)||(36615149-36615242)
chr2 (155-243)||(36648906-36648999)
chr2 (164-198)||(19582060-19582094)
chr2 (156-198)||(33053359-33053401)
chr2 (167-242)||(18945913-18945991)
[»] chr8 (15 HSPs)
chr8 (130-243)||(14130081-14130197)
chr8 (130-198)||(30440653-30440721)
chr8 (155-243)||(24730973-24731064)
chr8 (156-243)||(20693741-20693831)
chr8 (130-243)||(24578834-24578950)
chr8 (151-198)||(16598185-16598232)
chr8 (135-198)||(24577633-24577696)
chr8 (155-198)||(26377972-26378015)
chr8 (156-195)||(16598108-16598147)
chr8 (159-243)||(2687687-2687774)
chr8 (155-239)||(26374841-26374928)
chr8 (135-198)||(30442447-30442511)
chr8 (159-243)||(2689092-2689178)
chr8 (175-243)||(24731188-24731259)
chr8 (155-191)||(2188455-2188491)
[»] chr1 (13 HSPs)
chr1 (135-242)||(10925661-10925771)
chr1 (156-243)||(28660803-28660894)
chr1 (130-243)||(31915465-31915582)
chr1 (135-243)||(10927115-10927224)
chr1 (130-243)||(12944032-12944148)
chr1 (130-239)||(239603-239715)
chr1 (159-235)||(50713658-50713737)
chr1 (154-243)||(43681399-43681493)
chr1 (156-243)||(8221430-8221520)
chr1 (156-198)||(9030958-9031001)
chr1 (156-198)||(9199320-9199362)
chr1 (159-212)||(23987517-23987573)
chr1 (157-198)||(9195047-9195088)
[»] chr6 (10 HSPs)
chr6 (159-243)||(1127199-1127286)
chr6 (130-198)||(14216810-14216879)
chr6 (156-242)||(11658873-11658963)
chr6 (159-237)||(12882067-12882149)
chr6 (130-198)||(34373891-34373959)
chr6 (135-198)||(24443176-24443239)
chr6 (138-243)||(32361292-32361401)
chr6 (155-198)||(18727950-18727993)
chr6 (158-243)||(27822175-27822264)
chr6 (171-243)||(33615561-33615636)
[»] chr3 (6 HSPs)
chr3 (136-223)||(8536450-8536540)
chr3 (155-243)||(2472745-2472837)
chr3 (137-225)||(1320124-1320215)
chr3 (158-197)||(52708798-52708837)
chr3 (167-243)||(5324689-5324765)
chr3 (130-238)||(365654-365766)
[»] scaffold0251 (1 HSPs)
scaffold0251 (156-226)||(9644-9717)
[»] chr5 (3 HSPs)
chr5 (138-198)||(18252340-18252400)
chr5 (169-241)||(26140298-26140373)
chr5 (167-243)||(19497361-19497441)
[»] scaffold0240 (3 HSPs)
scaffold0240 (135-198)||(15968-16031)
scaffold0240 (130-191)||(1573-1634)
scaffold0240 (130-182)||(15902-15954)
[»] scaffold0054 (1 HSPs)
scaffold0054 (135-192)||(49243-49300)


Alignment Details
Target: scaffold0024 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 132 - 243
Target Start/End: Complemental strand, 144088 - 143977
Alignment:
Q  132 ctcaacagttgtagcatatgaggtaacttttatttattcaataatattttagagagttttctcaattggtggattccggaaatctattttcacaaatttt 231  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  144088 ctcaacagttgtagcatatgagataacttttatttattcaataatattttagagagttttctcaattggtggattccggaaacctattttcacaaatttt 143989  T
Q  232 tcgcttgcaaac 243  Q
    ||||||||||||    
T  143988 tcgcttgcaaac 143977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 140 - 243
Target Start/End: Original strand, 24840069 - 24840175
Alignment:
Q  140 ttgtagcatatgaggtaacttttatttattcaataatattttagagagttttctcaat---tggtggattccggaaatctattttcacaaatttttcgct 236  Q
    ||||||| || |||| |||||||||||||| |||||||||||||||||||||||||||   |||||||||||||||  |||||||||||| ||| |||||    
T  24840069 ttgtagcctaagaggcaacttttatttattgaataatattttagagagttttctcaatttctggtggattccggaaccctattttcacaagtttgtcgct 24840168  T
Q  237 tgcaaac 243  Q
    |||||||    
T  24840169 tgcaaac 24840175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 130 - 243
Target Start/End: Complemental strand, 8916550 - 8916434
Alignment:
Q  130 agctcaacagttgtagcatatgaggtaacttttatttattcaataatattttagagagttttctcaat---tggtggattccggaaatctattttcacaa 226  Q
    |||| |||||||||| |||| |||| |||||||||| |||||||||||||||||||||||||||||||   ||||||||||| ||| ||||||| |||||    
T  8916550 agcttaacagttgtaacataagaggaaacttttattcattcaataatattttagagagttttctcaatttctggtggattccagaactctatttccacaa 8916451  T
Q  227 atttttcgcttgcaaac 243  Q
     ||| ||| ||||||||    
T  8916450 gtttatcgtttgcaaac 8916434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 138 - 243
Target Start/End: Original strand, 1369729 - 1369837
Alignment:
Q  138 agttgtagcatatgaggtaacttttatttattcaataatattttagagagttttctcaat---tggtggattccggaaatctattttcacaaatttttcg 234  Q
    ||||||||| || |||  |||||||||| |||||||||||||||| ||||||||||||||   |||||||||||||||  ||||||| |||| ||| |||    
T  1369729 agttgtagcctaagagacaacttttattaattcaataatattttatagagttttctcaatttctggtggattccggaaccctattttaacaagtttatcg 1369828  T
Q  235 cttgcaaac 243  Q
    |||||||||    
T  1369829 cttgcaaac 1369837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 243
Target Start/End: Original strand, 1786599 - 1786715
Alignment:
Q  130 agctcaacagttgtagcatatgaggtaacttttatttattcaataatattttagagagttttctcaat---tggtggattccggaaatctattttcacaa 226  Q
    |||| |||||||||||| || |||| |||||||||| ||| |||||||||||||||||||||| ||||   || ||||||| ||||  |||||||| ||     
T  1786599 agcttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttcgcaatttctgatggattctggaaccctattttcgcat 1786698  T
Q  227 atttttcgcttgcaaac 243  Q
     ||| ||||||||||||    
T  1786699 gtttgtcgcttgcaaac 1786715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 239
Target Start/End: Complemental strand, 11000999 - 11000887
Alignment:
Q  130 agctcaacagttgtagcatatgaggtaacttttatttattcaataatattttagagagttttctcaat---tggtggattccggaaatctattttcacaa 226  Q
    |||| |||||||||||| || |||| || | ||||| |||||||||||||||||||||||||| ||||   ||||||||||| |||  |||||||||| |    
T  11000999 agcttaacagttgtagcttaagaggcaattattattcattcaataatattttagagagttttcccaatttctggtggattcctgaaccctattttcacta 11000900  T
Q  227 atttttcgcttgc 239  Q
     ||| ||||||||    
T  11000899 gtttgtcgcttgc 11000887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 243
Target Start/End: Original strand, 11228897 - 11229013
Alignment:
Q  130 agctcaacagttgtagcatatgaggtaacttttatttattcaataatattttagagagttttctcaat---tggtggattccggaaatctattttcacaa 226  Q
    |||| |||| |||||||||| |||| |||||||||| | ||||||||||||||||||||||| |||||   |||||||||| ||||  || ||||||||     
T  11228897 agcttaacatttgtagcataagaggcaacttttattcactcaataatattttagagagttttatcaatttctggtggattctggaacccttttttcacac 11228996  T
Q  227 atttttcgcttgcaaac 243  Q
     ||| |||| |||||||    
T  11228997 gtttgtcgcctgcaaac 11229013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 243
Target Start/End: Original strand, 27142582 - 27142698
Alignment:
Q  130 agctcaacagttgtagcatatgaggtaacttttatttattcaataatattttagagagttttctcaat---tggtggattccggaaatctattttcacaa 226  Q
    |||| |||| ||||||  || |||| |||||||||| ||| |||||||||| ||||||||||||||||   |||||| ||| ||||  ||||||||||||    
T  27142582 agcttaacaattgtaggttaagagggaacttttattaattgaataatatttcagagagttttctcaatttctggtggtttcaggaaccctattttcacaa 27142681  T
Q  227 atttttcgcttgcaaac 243  Q
     ||| ||||||||||||    
T  27142682 gtttgtcgcttgcaaac 27142698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 243
Target Start/End: Original strand, 1874490 - 1874570
Alignment:
Q  164 tttattcaataatattttagagagtttt-ctcaattggtggattccggaaatctattttcacaaatttttcgcttgcaaac 243  Q
    |||||||||||||||||||||||||||| ||||||||||||||||  |||   ||||||||||| ||| ||| ||||||||    
T  1874490 tttattcaataatattttagagagttttcctcaattggtggattcttgaaccttattttcacaagtttgtcgtttgcaaac 1874570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 135 - 198
Target Start/End: Complemental strand, 8063964 - 8063901
Alignment:
Q  135 aacagttgtagcatatgaggtaacttttatttattcaataatattttagagagttttctcaatt 198  Q
    |||||||||||| || |||| | |||||||| |||||||||||||||||||| |||||||||||    
T  8063964 aacagttgtagcttaagaggcatcttttattaattcaataatattttagagaattttctcaatt 8063901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 155 - 243
Target Start/End: Complemental strand, 4888834 - 4888742
Alignment:
Q  155 taacttttatttattcaataatattttagagagt-tttctcaatt---ggtggattccggaaatctattttcacaaatttttcgcttgcaaac 243  Q
    ||||||||||| | |||||||||||||||||||| ||| ||||||   |||| ||||||||| ||||||||||||  ||| ||||||||||||    
T  4888834 taacttttattcaatcaataatattttagagagtgtttttcaatttctggtgaattccggaactctattttcacaggtttgtcgcttgcaaac 4888742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 235
Target Start/End: Complemental strand, 1690299 - 1690196
Alignment:
Q  135 aacagttgtagcatatgaggtaacttttatttattcaataatattttagagagttttctcaat---tggtggattccggaaatctattttcacaaatttt 231  Q
    |||||||||||| || |||  |||||||||| ||| |||| ||||||||||| ||||||||||   || |||||||| |||  ||||||||||||||||     
T  1690299 aacagttgtagcctaagagacaacttttattcattaaatactattttagagaattttctcaatttctgatggattccagaaccctattttcacaaatttg 1690200  T
Q  232 tcgc 235  Q
    ||||    
T  1690199 tcgc 1690196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 243
Target Start/End: Complemental strand, 6451918 - 6451807
Alignment:
Q  135 aacagttgtagcatatgaggtaacttttatttattcaataatattttagagagttttctcaa---ttggtggattccggaaatctattttcacaaatttt 231  Q
    |||||||||||| || |||  |||||| ||| ||||||||||||||||||||||||| ||||   ||| ||||||||| ||   ||||||||||  |||     
T  6451918 aacagttgtagcctaagagacaactttaattcattcaataatattttagagagttttttcaatttttgttggattccgaaaccttattttcacaggtttg 6451819  T
Q  232 tcgcttgcaaac 243  Q
    ||||||||||||    
T  6451818 tcgcttgcaaac 6451807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 198
Target Start/End: Original strand, 35814814 - 35814855
Alignment:
Q  157 acttttatttattcaataatattttagagagttttctcaatt 198  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  35814814 acttttattcattcaataatattttagagagttttctcaatt 35814855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 243
Target Start/End: Complemental strand, 3778862 - 3778765
Alignment:
Q  155 taacttttatttattcaataatattttagagagttt------tctcaatt---ggtggattccggaaatctattttcacaaatttttcgcttgcaaac 243  Q
    ||||||||||| | ||||||||||||||||||||||      ||||||||   ||||||||||||||  |||||||||||| ||| ||||||||||||    
T  3778862 taacttttattcaatcaataatattttagagagtttaatttttctcaatttctggtggattccggaaccctattttcacaagtttctcgcttgcaaac 3778765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 4133454 - 4133398
Alignment:
Q  138 agttgtagcatatgaggtaacttttatttattcaataatattttagagagttttctc 194  Q
    ||||||||| || |||| ||||| |||| ||||||||||||||||||||||||||||    
T  4133454 agttgtagcctaagaggcaacttatattcattcaataatattttagagagttttctc 4133398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 151 - 243
Target Start/End: Original strand, 1365608 - 1365704
Alignment:
Q  151 gaggtaacttttatttattcaataatattttagagag-ttttctcaa---ttggtggattccggaaatctattttcacaaatttttcgcttgcaaac 243  Q
    |||| |||||||||| ||||||||||||||||||||| |||||||||   ||||||||||  ||||  |||||||||||| ||  |||||| |||||    
T  1365608 gaggcaacttttattcattcaataatattttagagagtttttctcaatttttggtggattatggaaccctattttcacaagttcatcgcttacaaac 1365704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 242
Target Start/End: Original strand, 5934520 - 5934635
Alignment:
Q  130 agctcaacagttgtagcatatgaggtaacttttatttattcaataatattttagagagttttctcaat---tggtggattccggaaatctattttcacaa 226  Q
    |||| ||| |||||||| || || | || ||||||| |||||||||||||||||||| ||||||||||   |  ||||||| | ||  ||||||||||||    
T  5934520 agcttaacggttgtagcctaagaagcaatttttattcattcaataatattttagagaattttctcaatttctaatggattctgaaatcctattttcacaa 5934619  T
Q  227 atttttcgcttgcaaa 242  Q
     ||| |||||||||||    
T  5934620 gtttgtcgcttgcaaa 5934635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 4956009 - 4955969
Alignment:
Q  158 cttttatttattcaataatattttagagagttttctcaatt 198  Q
    |||||||| ||||||||||||||||| ||||||||||||||    
T  4956009 cttttattcattcaataatattttagggagttttctcaatt 4955969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 11228636 - 11228704
Alignment:
Q  130 agctcaacagttgtagcatatgaggtaacttttatttattcaataatattttagagagttttctcaatt 198  Q
    |||| ||||| |||||| ||  |||||||||||| | | ||| ||||||||||||||||||||||||||    
T  11228636 agcttaacaggtgtagcctaaaaggtaacttttaatcaatcactaatattttagagagttttctcaatt 11228704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 239
Target Start/End: Original strand, 30217754 - 30217843
Alignment:
Q  155 taacttttatttattcaataatattttagaga--gttttctcaat---tggtggattccggaaatctattttcacaaatttttcgcttgc 239  Q
    ||||||||||| | ||||||||||||||||||  ||| |||||||   ||||||||| | ||| ||||||||||||| ||| ||||||||    
T  30217754 taacttttattcaatcaataatattttagagagtgttatctcaattactggtggatttcagaactctattttcacaagtttgtcgcttgc 30217843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 193
Target Start/End: Complemental strand, 8915313 - 8915279
Alignment:
Q  159 ttttatttattcaataatattttagagagttttct 193  Q
    ||||||| |||||||||||||||||||||||||||    
T  8915313 ttttattcattcaataatattttagagagttttct 8915279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 198
Target Start/End: Complemental strand, 19404262 - 19404214
Alignment:
Q  151 gaggtaacttttatttattcaataa-tattttagagagttttctcaatt 198  Q
    |||| |||||||||| ||||||||| |||||||||||||||| ||||||    
T  19404262 gaggcaacttttattcattcaataaatattttagagagttttttcaatt 19404214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 130 - 243
Target Start/End: Original strand, 7633996 - 7634112
Alignment:
Q  130 agctcaacagttgtagcatatgaggtaacttttatttattcaataatattttagagagttttctcaat---tggtggattccggaaatctattttcacaa 226  Q
    |||| |||||||||| |||| |||| |||||||||| |||||||||||||||||||||||||||||||   ||||||||||| ||| ||||||| |||||    
T  7633996 agcttaacagttgtaacataagaggaaacttttattcattcaataatattttagagagttttctcaatttctggtggattccagaactctatttccacaa 7634095  T
Q  227 atttttcgcttgcaaac 243  Q
     ||| ||| ||||||||    
T  7634096 gtttatcgtttgcaaac 7634112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 10494848 - 10494935
Alignment:
Q  159 ttttatttattcaataatattttagagagttttctcaat---tggtggattccggaaatctattttcacaaatttttcgcttgcaaac 243  Q
    ||||||| |||||||||||||||||||||||||||||||   ||||| ||||||||| ||||||||||||  ||| || |||||||||    
T  10494848 ttttattcattcaataatattttagagagttttctcaatttctggtgaattccggaactctattttcacaggtttgtcacttgcaaac 10494935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 13991543 - 13991486
Alignment:
Q  139 gttgtagcatatgaggtaacttttatttattcaataatattttagagagttttctcaa 196  Q
    |||||||| || |||| |||||||||| ||||||||||||||||||||||||||||||    
T  13991543 gttgtagcctaagagggaacttttattcattcaataatattttagagagttttctcaa 13991486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 3765380 - 3765312
Alignment:
Q  130 agctcaacagttgtagcatatgaggtaacttttatttattcaataatattttagagagttttctcaatt 198  Q
    |||| |||| ||||||||||  ||  |||||||||||||||||||||||||| ||||||||||||||||    
T  3765380 agcttaacaattgtagcataaaagccaacttttatttattcaataatatttttgagagttttctcaatt 3765312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 17255063 - 17255007
Alignment:
Q  138 agttgtagcatatgaggtaacttttatttattcaataatattttagagagttttctc 194  Q
    ||||||||| || |||| ||||| |||| ||||||||||||||||||||||||||||    
T  17255063 agttgtagcctaagaggcaacttatattcattcaataatattttagagagttttctc 17255007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 243
Target Start/End: Complemental strand, 22486921 - 22486833
Alignment:
Q  156 aacttttatttattcaataatattttagagagttttctcaat---tggtggattccggaaatctattttcacaaatttttcgcttgcaaac 243  Q
    ||||||||||||||| ||||| ||| ||||||||||||||||   ||||||||||||| || |||||||||| || || ||||||||||||    
T  22486921 aacttttatttattccataatgtttcagagagttttctcaatttctggtggattccgg-aacctattttcac-aagttgtcgcttgcaaac 22486833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 230
Target Start/End: Original strand, 28897913 - 28897990
Alignment:
Q  157 acttttatttattcaataatattttagagagttttctcaat----tggtggattccggaaatctattttcacaaattt 230  Q
    ||||||||| |||||||||||||||| ||| ||||||||||    |||||||||||||||   |||||||||||||||    
T  28897913 acttttattcattcaataatattttaaagacttttctcaattttctggtggattccggaacattattttcacaaattt 28897990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 243
Target Start/End: Complemental strand, 13990823 - 13990734
Alignment:
Q  157 acttttatttattcaataatattttagagagttttctcaat---tggtggattccggaaatctattttcacaaatttttcgcttgcaaac 243  Q
    ||||||||| ||||||||||||||||||||||||| |||||   || |||||||| |||  |||||||||||| ||| |  |||||||||    
T  13990823 acttttattcattcaataatattttagagagttttttcaatttctgatggattccagaaccctattttcacaagtttgttacttgcaaac 13990734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 241
Target Start/End: Original strand, 15848361 - 15848435
Alignment:
Q  170 caataatattttagagagttttctcaa---ttggtggattccggaaatctattttcacaaatttttcgcttgcaa 241  Q
    ||||| |||||||||||||||||||||   |||||||||| ||||| ||| ||||||||| ||| || |||||||    
T  15848361 caatagtattttagagagttttctcaatttttggtggatttcggaactctcttttcacaattttgtcacttgcaa 15848435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 21433735 - 21433668
Alignment:
Q  130 agctcaacagttgtagcatatgaggtaacttttatttattcaataatattttagagagttttctcaatt 198  Q
    |||| |||||||||||| || |||  || ||||||| |||||||||||||||||||| |||||||||||    
T  21433735 agcttaacagttgtagc-taagagacaagttttattcattcaataatattttagagaattttctcaatt 21433668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 239
Target Start/End: Original strand, 40206072 - 40206177
Alignment:
Q  138 agttgtagcatatgaggtaacttttatttattcaataatattttagag-agttttctcaat---tggtggattccggaaatctattttcacaaatttttc 233  Q
    ||||||||  || ||| ||| ||||||| ||||||||||||||||||| | ||||||||||   ||||| |||||| ||  |||||||||||| ||| ||    
T  40206072 agttgtagtctaagagataatttttattcattcaataatattttagagaatttttctcaatttctggtgaattccgaaacactattttcacaagtttgtc 40206171  T
Q  234 gcttgc 239  Q
    ||||||    
T  40206172 gcttgc 40206177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 193
Target Start/End: Original strand, 7635235 - 7635269
Alignment:
Q  159 ttttatttattcaataatattttagagagttttct 193  Q
    ||||||| |||||||||||||||||||||||||||    
T  7635235 ttttattcattcaataatattttagagagttttct 7635269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 243
Target Start/End: Complemental strand, 18657178 - 18657099
Alignment:
Q  167 attcaataatattttagagagttttctcaatt---ggtggattccggaaatctattttcacaaatttttcgcttgcaaac 243  Q
    |||||||||||||||| |||||||||||||||   ||||||||| | ||  ||||||| |||| ||| |||| |||||||    
T  18657178 attcaataatattttatagagttttctcaatttccggtggattctgaaatcctatttttacaagtttgtcgcatgcaaac 18657099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 243
Target Start/End: Complemental strand, 18689657 - 18689578
Alignment:
Q  167 attcaataatattttagagagttttctcaat---tggtggattccggaaatctattttcacaaatttttcgcttgcaaac 243  Q
    |||||||||||||||| ||||||||||||||   |||||||||| | ||  ||||||| |||| ||| |||| |||||||    
T  18689657 attcaataatattttatagagttttctcaatttctggtggattctgcaaccctatttttacaagtttgtcgcatgcaaac 18689578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 243
Target Start/End: Original strand, 9260515 - 9260605
Alignment:
Q  156 aacttttatttattcaataatattttagagagttttctcaat---tggtggattccggaaatctattttcacaaatttttcgcttgcaaac 243  Q
    |||| ||||| ||||||| |||||||||| ||||||||||||   |||||||||| | ||  |||||||| ||| ||| ||| ||||||||    
T  9260515 aactattattcattcaattatattttagatagttttctcaatttctggtggattctgaaaccctattttcgcaagtttgtcgtttgcaaac 9260605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 155 - 243
Target Start/End: Original strand, 23457587 - 23457678
Alignment:
Q  155 taacttttatttattcaataatattttagagagttttctcaa---ttggtggattccggaaatctattttcacaaatttttcgcttgcaaac 243  Q
    ||||||||||| ||||||||||||||||||||||||||||||   ||||||||||||||||  |||||||||||| ||| ||||||||||||    
T  23457587 taacttttattcattcaataatattttagagagttttctcaatttttggtggattccggaaccctattttcacaagtttgtcgcttgcaaac 23457678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 243
Target Start/End: Original strand, 33051560 - 33051650
Alignment:
Q  156 aacttttatttattcaataatattttagagagttttctcaat---tggtggattccggaaatctattttcacaaatttttcgcttgcaaac 243  Q
    ||||| |||| |||||||||||||||||||||||||||||||   | ||||||||| |||  ||||||||| || ||| ||||||||||||    
T  33051560 aacttatattcattcaataatattttagagagttttctcaatttctagtggattccagaaccctattttcaaaagtttgtcgcttgcaaac 33051650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 154 - 239
Target Start/End: Original strand, 4184868 - 4184957
Alignment:
Q  154 gtaacttttatttattcaataatattttagagag-ttttctcaat---tggtggattccggaaatctattttcacaaatttttcgcttgc 239  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||   | |||||||||| ||  |||||||||||| ||| ||||||||    
T  4184868 gtaacttttattcattcaataatattttagagagtttttctcaatttctcgtggattccgaaaccctattttcacaagtttgtcgcttgc 4184957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 158 - 243
Target Start/End: Complemental strand, 32162115 - 32162026
Alignment:
Q  158 cttttatttattcaataatattttagag-agttttctcaat---tggtggattccggaaatctattttcacaaatttttcgcttgcaaac 243  Q
    |||||||||||||||||||||||||||| |||||||||| |   ||||||||||| |||  |||||||||||| ||| || |||||||||    
T  32162115 cttttatttattcaataatattttagagaagttttctcagtttctggtggattcctgaaccctattttcacaagtttgtcacttgcaaac 32162026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 135 - 243
Target Start/End: Original strand, 21772295 - 21772407
Alignment:
Q  135 aacagttgtagcatatgaggtaacttttatttattcaataatattt-tagagagttttctcaat---tggtggattccggaaatctattttcacaaattt 230  Q
    |||||||||||| || ||| |||||||||||  |||||||||||||  ||||||||||||||||   || ||||||| ||||  ||||||||| || |||    
T  21772295 aacagttgtagcttaagagataacttttattcgttcaataatatttcaagagagttttctcaatttgtgatggattcaggaaccctattttcataagttt 21772394  T
Q  231 ttcgcttgcaaac 243  Q
     ||||||||||||    
T  21772395 gtcgcttgcaaac 21772407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 28737782 - 28737870
Alignment:
Q  159 ttttatttattcaataatattttagagagttttctcaat---tggtggattccggaaatctattttcacaaatttt-tcgcttgcaaac 243  Q
    ||||||| |||||||||||||||||||||||||||||||   || ||||||| | || ||||||||||||| |||| || |||||||||    
T  28737782 ttttattcattcaataatattttagagagttttctcaatttctgttggattctgaaactctattttcacaagttttgtctcttgcaaac 28737870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 1218452 - 1218392
Alignment:
Q  138 agttgtagcatatgaggtaacttttatttattcaataatattttagagagttttctcaatt 198  Q
    |||||||| ||| |||  |||||||||| |||||||||||||||||||| |||||||||||    
T  1218452 agttgtagtataagagacaacttttattcattcaataatattttagagaattttctcaatt 1218392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 243
Target Start/End: Complemental strand, 5171758 - 5171642
Alignment:
Q  130 agctcaacagttgtagcatatgaggtaacttttatttattcaataatattttagagagttttctcaat---tggtggattccggaaatctattttcacaa 226  Q
    |||| |||||||||||  || |||  || ||||||| ||| |||||||||||||||||||||||||||   | ||||||||  |||  ||||||| ||||    
T  5171758 agcttaacagttgtagtctaagagacaatttttattcattaaataatattttagagagttttctcaatttctagtggattcttgaaccctatttttacaa 5171659  T
Q  227 atttttcgcttgcaaac 243  Q
     ||| ||||||||||||    
T  5171658 gtttgtcgcttgcaaac 5171642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 155 - 239
Target Start/End: Original strand, 12966417 - 12966505
Alignment:
Q  155 taacttttatttattcaataatattttagagag-ttttctcaa---ttggtggattccggaaatctattttcacaaatttttcgcttgc 239  Q
    ||||||||||| | ||||||||||||||||||| |||||||||   |||||||||| |||||  |||||||||||| ||  ||||||||    
T  12966417 taacttttattcaatcaataatattttagagagtttttctcaatttttggtggatttcggaaccctattttcacaagttcgtcgcttgc 12966505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 32163944 - 32163876
Alignment:
Q  130 agctcaacagttgtagcatatgaggtaacttttatttattcaataatattttagag-agttttctcaatt 198  Q
    |||| ||||||| |||| || |||| |||||||||| ||||||||||||||||||| |||||||||||||    
T  32163944 agcttaacagttatagc-taagaggaaacttttattcattcaataatattttagagaagttttctcaatt 32163876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 243
Target Start/End: Original strand, 36615149 - 36615242
Alignment:
Q  155 taacttttatttattcaataatattttagagagttttctc--aatt---ggtggattccggaaatctattttcacaaatttttcgcttgcaaac 243  Q
    ||||||||||| | ||||||||||||||||||||||| ||  ||||   ||||||||||||||   |||||| |||| ||| ||||||||||||    
T  36615149 taacttttattcaatcaataatattttagagagttttttcttaatttctggtggattccggaaccttatttttacaattttgtcgcttgcaaac 36615242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 243
Target Start/End: Original strand, 36648906 - 36648999
Alignment:
Q  155 taacttttatttattcaataatattttagagagttttctc--aatt---ggtggattccggaaatctattttcacaaatttttcgcttgcaaac 243  Q
    ||||||||||| | ||||||||||||||||||||||| ||  ||||   |||||||||| |||  ||||||| |||| ||| ||||||||||||    
T  36648906 taacttttattcaatcaataatattttagagagttttttcttaatttctggtggattccagaaccctatttttacaattttgtcgcttgcaaac 36648999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 198
Target Start/End: Original strand, 19582060 - 19582094
Alignment:
Q  164 tttattcaataatattttagagagttttctcaatt 198  Q
    |||||||||||||||||||||||||||| ||||||    
T  19582060 tttattcaataatattttagagagttttttcaatt 19582094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 198
Target Start/End: Original strand, 33053359 - 33053401
Alignment:
Q  156 aacttttatttattcaataatattttagagagttttctcaatt 198  Q
    |||||||||| |||||||||||||||||||  |||||||||||    
T  33053359 aacttttattcattcaataatattttagaggattttctcaatt 33053401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 242
Target Start/End: Original strand, 18945913 - 18945991
Alignment:
Q  167 attcaataatattttagagagttttctcaat---tggtggattccggaaatctattttcacaaatttttcgcttgcaaa 242  Q
    |||||||||||||||||||| |||| | |||   ||||| ||||||||| ||| || |||||| ||| |||||||||||    
T  18945913 attcaataatattttagagaattttattaatttctggtgaattccggaactctgttctcacaagtttgtcgcttgcaaa 18945991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 130 - 243
Target Start/End: Original strand, 14130081 - 14130197
Alignment:
Q  130 agctcaacagttgtagcatatgaggtaacttttatttattcaataatattttagagagttttctcaat---tggtggattccggaaatctattttcacaa 226  Q
    |||| |||| ||||||  || |||| |||||||||| ||||||||||||||| |||||||||||||||   |||||||||||||||   |||||||||||    
T  14130081 agcttaacaattgtagtctaagaggcaacttttattcattcaataatattttggagagttttctcaatttctggtggattccggaaccttattttcacaa 14130180  T
Q  227 atttttcgcttgcaaac 243  Q
    |||| ||||||||||||    
T  14130181 atttatcgcttgcaaac 14130197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 30440653 - 30440721
Alignment:
Q  130 agctcaacagttgtagcatatgaggtaacttttatttattcaataatattttagagagttttctcaatt 198  Q
    |||| ||||||||||||||| || | |||||||||| ||||||||||||||||||||||||||||||||    
T  30440653 agcttaacagttgtagcataagatgaaacttttattcattcaataatattttagagagttttctcaatt 30440721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 155 - 243
Target Start/End: Original strand, 24730973 - 24731064
Alignment:
Q  155 taacttttatttattcaataatattttagagagttttctcaa---ttggtggattccggaaatctattttcacaaatttttcgcttgcaaac 243  Q
    ||||||||||| ||||||||||||||||||||||||||||||   ||| ||||||||| ||  |||||||||||| ||| | ||||||||||    
T  24730973 taacttttattcattcaataatattttagagagttttctcaatttttgatggattccgaaatcctattttcacaagtttgttgcttgcaaac 24731064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 156 - 243
Target Start/End: Original strand, 20693741 - 20693831
Alignment:
Q  156 aacttttatttattcaataatattttagagagttttctcaat---tggtggattccggaaatctattttcacaaatttttcgcttgcaaac 243  Q
    ||||||||||  |||||||||| |||||||||||||||||||   || ||||||||||||   ||||||||||||||| ||||||||||||    
T  20693741 aacttttattacttcaataatactttagagagttttctcaatttctgatggattccggaaccatattttcacaaatttgtcgcttgcaaac 20693831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 243
Target Start/End: Complemental strand, 24578950 - 24578834
Alignment:
Q  130 agctcaacagttgtagcatatgaggtaacttttatttattcaataatattttagagagttttctcaat---tggtggattccggaaatctattttcacaa 226  Q
    |||| |||| ||||||| || | || |||||||||||||| |||||||||||||||||||||| ||||   | ||||||||| |||  |||||||||||     
T  24578950 agcttaacatttgtagcttaaggggcaacttttatttattaaataatattttagagagttttcacaatttctagtggattccagaaccctattttcacag 24578851  T
Q  227 atttttcgcttgcaaac 243  Q
    ||||  |||||||||||    
T  24578850 atttaccgcttgcaaac 24578834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 151 - 198
Target Start/End: Original strand, 16598185 - 16598232
Alignment:
Q  151 gaggtaacttttatttattcaataatattttagagagttttctcaatt 198  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||    
T  16598185 gaggcaacttttattcattcaataatattttagagagttttctcaatt 16598232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 135 - 198
Target Start/End: Complemental strand, 24577696 - 24577633
Alignment:
Q  135 aacagttgtagcatatgaggtaacttttatttattcaataatattttagagagttttctcaatt 198  Q
    ||||||| |||| || |||| | |||||||| ||||||||||||||||||||||||||||||||    
T  24577696 aacagttatagcctaagaggcagcttttattcattcaataatattttagagagttttctcaatt 24577633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 155 - 198
Target Start/End: Original strand, 26377972 - 26378015
Alignment:
Q  155 taacttttatttattcaataatattttagagagttttctcaatt 198  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  26377972 taacttttattcattcaataatattttagagagttttctcaatt 26378015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 195
Target Start/End: Original strand, 16598108 - 16598147
Alignment:
Q  156 aacttttatttattcaataatattttagagagttttctca 195  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  16598108 aacttttattcattcaataatattttagagagttttctca 16598147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 2687687 - 2687774
Alignment:
Q  159 ttttatttattcaataatattttagagagttttctcaat---tggtggattccggaaatctattttcacaaatttttcgcttgcaaac 243  Q
    ||||||| |||||||||||||| | ||||||||||||||   | ||||||||  |||  |||||||||||| ||| ||||||||||||    
T  2687687 ttttattcattcaataatatttcaaagagttttctcaatttcttgtggattctagaaccctattttcacaagtttgtcgcttgcaaac 2687774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 239
Target Start/End: Original strand, 26374841 - 26374928
Alignment:
Q  155 taacttttatttattcaataatattttagagagttttctcaat---tggtggattccggaaatctattttcacaaatttttcgcttgc 239  Q
    ||||||||||| ||||||||||| ||||||||||||||| |||   ||||||||| || ||  ||||||| |||| ||| ||||||||    
T  26374841 taacttttattcattcaataataatttagagagttttcttaatttctggtggatttcgaaaccctatttttacaagtttgtcgcttgc 26374928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 198
Target Start/End: Original strand, 30442447 - 30442511
Alignment:
Q  135 aacagttgtagcatat-gaggtaacttttatttattcaataatattttagagagttttctcaatt 198  Q
    |||||||||||| ||  |||||| ||||| || |||||||||||||||| |||||||||||||||    
T  30442447 aacagttgtagcctaaagaggtatcttttgttcattcaataatattttaaagagttttctcaatt 30442511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 2689092 - 2689178
Alignment:
Q  159 ttttatttattcaataatattttagagagttttctcaatt--ggtggattccggaaatctattttcacaaatttttcgcttgcaaac 243  Q
    |||||||  |||||||| |||| |||||||||||||||||   |||||| ||||||  |||||||||||  ||| ||||||||||||    
T  2689092 ttttattctttcaataaaatttcagagagttttctcaatttctgtggatgccggaaccctattttcacagttttgtcgcttgcaaac 2689178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 24731188 - 24731259
Alignment:
Q  175 atattttagagagttttctcaat---tggtggattccggaaatctattttcacaaatttttcgcttgcaaac 243  Q
    |||||||||||||||||||||||   || || |||||| || ||||||||||||| ||| | ||||||||||    
T  24731188 atattttagagagttttctcaatttctgatgaattccgaaactctattttcacaagtttgttgcttgcaaac 24731259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 191
Target Start/End: Complemental strand, 2188491 - 2188455
Alignment:
Q  155 taacttttatttattcaataatattttagagagtttt 191  Q
    ||||||||||| | |||||||||||||||||||||||    
T  2188491 taacttttattcaatcaataatattttagagagtttt 2188455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 135 - 242
Target Start/End: Original strand, 10925661 - 10925771
Alignment:
Q  135 aacagttgtagcatatgaggtaacttttatttattcaataatattttagagagttttctcaatt---ggtggattccggaaatctattttcacaaatttt 231  Q
    |||||||||||| || |||| |||||||||| ||||||||||||||||||||||||| ||||||   |||||||||| |||   |||||| |||| |||     
T  10925661 aacagttgtagcttaagaggaaacttttattcattcaataatattttagagagttttttcaattttcggtggattccagaaccatatttttacaagtttg 10925760  T
Q  232 tcgcttgcaaa 242  Q
    |||||||||||    
T  10925761 tcgcttgcaaa 10925771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 156 - 243
Target Start/End: Complemental strand, 28660894 - 28660803
Alignment:
Q  156 aacttttatttattcaataatattttagagagttttctcaat----tggtggattccggaaatctattttcacaaatttttcgcttgcaaac 243  Q
    |||||||||| ||||||||||||||||||||||||||| |||    ||||||||| |||||  |||||||||||| ||| ||||||||||||    
T  28660894 aacttttattaattcaataatattttagagagttttctaaattttctggtggatttcggaaccctattttcacaagtttgtcgcttgcaaac 28660803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 130 - 243
Target Start/End: Original strand, 31915465 - 31915582
Alignment:
Q  130 agctcaacagttgtagcatatgaggtaacttttatttattcaataatattttagagagtttt-ctcaatt---ggtggattccggaaatctattttcaca 225  Q
    |||| ||||| |||||| || ||| ||||||||||| | ||| || |||||||||||||||| |||||||   ||||||||||||||  |||||||||||    
T  31915465 agcttaacagatgtagcctaagagataacttttattcaatcagtagtattttagagagtttttctcaatttctggtggattccggaaccctattttcaca 31915564  T
Q  226 aatttttcgcttgcaaac 243  Q
    | ||| ||||||||||||    
T  31915565 agtttgtcgcttgcaaac 31915582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 135 - 243
Target Start/End: Original strand, 10927115 - 10927224
Alignment:
Q  135 aacagttgtagcatatgaggtaacttttatttattcaataatattttagagagttttctcaat---tggtggattccggaaatctattttcacaaatttt 231  Q
    |||| ||||||| || |||  |||||||||| ||| |||||||||||||||||||||||||||   |||||||||||||||  |  ||||||||| |||     
T  10927115 aacaattgtagcctaagagacaacttttattcattaaataatattttagagagttttctcaatttctggtggattccggaa--cccttttcacaagtttg 10927212  T
Q  232 tcgcttgcaaac 243  Q
    ||||||||||||    
T  10927213 tcgcttgcaaac 10927224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 243
Target Start/End: Original strand, 12944032 - 12944148
Alignment:
Q  130 agctcaacagttgtagcatatgaggtaacttttatttattcaataatattttagagagttttctcaat---tggtggattccggaaatctattttcacaa 226  Q
    |||| |||| ||||||||||  | | |||||||||| |||||||| ||||||||||||||||||||||   ||||||||||| |||  ||||||| ||||    
T  12944032 agcttaacaattgtagcataaaatgcaacttttattcattcaatattattttagagagttttctcaatttctggtggattccagaaccctatttttacaa 12944131  T
Q  227 atttttcgcttgcaaac 243  Q
     ||| ||| ||||||||    
T  12944132 gtttgtcgtttgcaaac 12944148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 239
Target Start/End: Original strand, 239603 - 239715
Alignment:
Q  130 agctcaacagttgtagcatatgaggtaacttttatttattcaataatattttagagagttttctcaatt---ggtggattccggaaatctattttcacaa 226  Q
    |||| |||||||||||  ||  |||||||||||||| ||| ||||||||||||||| ||||||| ||||   | ||||||||||||  ||||||||| ||    
T  239603 agcttaacagttgtagtctaaaaggtaacttttattcatttaataatattttagagggttttcttaatttcagttggattccggaaccctattttcataa 239702  T
Q  227 atttttcgcttgc 239  Q
    ||||  |||||||    
T  239703 atttgacgcttgc 239715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 235
Target Start/End: Original strand, 50713658 - 50713737
Alignment:
Q  159 ttttatttattcaataatattttagagagttttctcaat---tggtggattccggaaatctattttcacaaatttttcgc 235  Q
    ||||||| ||||||||||||||| |||||||||||||||   |||||||||||| ||  |||||||||||| ||| ||||    
T  50713658 ttttattcattcaataatatttttgagagttttctcaatttctggtggattccgaaaccctattttcacaagtttgtcgc 50713737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 243
Target Start/End: Original strand, 43681399 - 43681493
Alignment:
Q  154 gtaacttttatttattcaataatatttta-gaga-gttttctcaatt---ggtggattccggaaatctattttcacaaatttttcgcttgcaaac 243  Q
    |||||||||||| |||||||||||||||| |||| ||||||| ||||   ||| ||||| |||  ||||||||||||||||| ||||||||||||    
T  43681399 gtaacttttattcattcaataatattttaagagaagttttcttaatttctggtagattctggatctctattttcacaaatttgtcgcttgcaaac 43681493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 243
Target Start/End: Original strand, 8221430 - 8221520
Alignment:
Q  156 aacttttatttattcaataatattttagagagttttctcaat---tggtggattccggaaatctattttcacaaatttttcgcttgcaaac 243  Q
    |||||||||| ||||||| |||||| | ||||||||||||||   ||||||||||| |||  ||||||||| || ||| ||| ||||||||    
T  8221430 aacttttattcattcaatgatatttcaaagagttttctcaatttctggtggattccagaaccctattttcataagtttgtcgtttgcaaac 8221520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 198
Target Start/End: Original strand, 9030958 - 9031001
Alignment:
Q  156 aacttttatttattcaataatattttagag-agttttctcaatt 198  Q
    |||||||||| ||||||||||||||||||| |||||||||||||    
T  9030958 aacttttattcattcaataatattttagagaagttttctcaatt 9031001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 198
Target Start/End: Complemental strand, 9199362 - 9199320
Alignment:
Q  156 aacttttatttattcaataatattttagagagttttctcaatt 198  Q
    ||||||||||  |||||||||||||||||||||||| ||||||    
T  9199362 aacttttattctttcaataatattttagagagttttttcaatt 9199320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 23987517 - 23987573
Alignment:
Q  159 ttttatttattcaataatattttagagagttttctcaat---tggtggattccggaa 212  Q
    ||||||| | ||||||||||||||||||||| |||||||   |||||||||||||||    
T  23987517 ttttattcaatcaataatattttagagagttatctcaatttctggtggattccggaa 23987573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 198
Target Start/End: Complemental strand, 9195088 - 9195047
Alignment:
Q  157 acttttatttattcaataatattttagagagttttctcaatt 198  Q
    ||||||||| ||||||||||| ||||||||||||| ||||||    
T  9195088 acttttattcattcaataatactttagagagttttttcaatt 9195047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 1127199 - 1127286
Alignment:
Q  159 ttttatttattcaataatattttagagagttttctcaa---ttggtggattccggaaatctattttcacaaatttttcgcttgcaaac 243  Q
    ||||||| |||||||| |||||||||||||||||||||   |||||| |||||| ||  |||||||||||||||| ||||||||||||    
T  1127199 ttttattcattcaatattattttagagagttttctcaatttttggtgtattccgaaacactattttcacaaatttgtcgcttgcaaac 1127286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 14216810 - 14216879
Alignment:
Q  130 agctcaacagttgtagcatatgagg-taacttttatttattcaataatattttagagagttttctcaatt 198  Q
    |||| |||||||||||| || |||| |||||||||||||||||||||||||| |||||||||||||||||    
T  14216810 agcttaacagttgtagcctaagaggataacttttatttattcaataatatttcagagagttttctcaatt 14216879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 242
Target Start/End: Original strand, 11658873 - 11658963
Alignment:
Q  156 aacttttatttattcaataatattttagagag-ttttctcaa---ttggtggattccggaaatctattttcacaaatttttcgcttgcaaa 242  Q
    |||||||||| | ||||||||||||||||||| |||||||||   ||||||||||||  || ||||||||||||| ||| |||||||||||    
T  11658873 aacttttattcaatcaataatattttagagagtttttctcaatttttggtggattccaaaactctattttcacaagtttatcgcttgcaaa 11658963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 159 - 237
Target Start/End: Original strand, 12882067 - 12882149
Alignment:
Q  159 ttttatttattcaataatattttagagag-ttttctcaat---tggtggattccggaaatctattttcacaaatttttcgctt 237  Q
    ||||||| ||||||||||||||||||||| ||||||||||   |||||||||||| ||  |||||||||||| ||| ||||||    
T  12882067 ttttattcattcaataatattttagagagtttttctcaatttctggtggattccgaaaccctattttcacaagtttgtcgctt 12882149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 34373959 - 34373891
Alignment:
Q  130 agctcaacagttgtagcatatgaggtaacttttatttattcaataatattttagagagttttctcaatt 198  Q
    |||| |||||||||||| || |||| | |||||  | ||||||||||||||||||||||||||||||||    
T  34373959 agcttaacagttgtagcctaagaggcagcttttgatcattcaataatattttagagagttttctcaatt 34373891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 198
Target Start/End: Complemental strand, 24443239 - 24443176
Alignment:
Q  135 aacagttgtagcatatgaggtaacttttatttattcaataatattttagagagttttctcaatt 198  Q
    |||||||||||| || ||| ||||||||||| |||||||||||||  |||||||||||| ||||    
T  24443239 aacagttgtagcctaagagataacttttattcattcaataatattgcagagagttttcttaatt 24443176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 243
Target Start/End: Original strand, 32361292 - 32361401
Alignment:
Q  138 agttgtagcatatgaggtaacttttatttattcaataatattttagagag-ttttctcaat---tggtggattccggaaatctattttcacaaatttttc 233  Q
    ||||||||| || |||  |||||||||| ||||||||||||||||||||| ||||||||||   | || ||||||||||   |||||| |||| ||| ||    
T  32361292 agttgtagcttaagagacaacttttattcattcaataatattttagagagtttttctcaatttctcgtagattccggaaccttatttttacaattttatc 32361391  T
Q  234 gcttgcaaac 243  Q
    ||||||||||    
T  32361392 gcttgcaaac 32361401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 198
Target Start/End: Complemental strand, 18727993 - 18727950
Alignment:
Q  155 taacttttatttattcaataatattttagagagttttctcaatt 198  Q
    ||||||||||| | ||||| ||||||||||||||||||||||||    
T  18727993 taacttttattcaatcaattatattttagagagttttctcaatt 18727950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 243
Target Start/End: Complemental strand, 27822264 - 27822175
Alignment:
Q  158 cttttatttattcaataatattttagagag-ttttctcaat---tggtggattccggaaatctattttcacaaatttttcgcttgcaaac 243  Q
    |||||||| | ||||||||||||||||||| ||||||||||   ||||||||| |||||  || ||||||||| ||| ||||||| ||||    
T  27822264 cttttattcaatcaataatattttagagagtttttctcaatttctggtggatttcggaaccctgttttcacaagtttgtcgcttgaaaac 27822175  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 243
Target Start/End: Complemental strand, 33615636 - 33615561
Alignment:
Q  171 aataatattttagagagttttctcaat---tggtggattccggaaatctattttcacaaatttttcgcttgcaaac 243  Q
    ||||||||||||||||||||| |||||   ||||| |||| | ||  |||||||||||| ||| ||||||||||||    
T  33615636 aataatattttagagagttttttcaatttatggtgaattctgaaaccctattttcacaagtttgtcgcttgcaaac 33615561  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 223
Target Start/End: Complemental strand, 8536540 - 8536450
Alignment:
Q  136 acagttgtagcatatgaggtaacttttatttattcaataatattttagagagttttctcaat---tggtggattccggaaatctattttca 223  Q
    ||||||||||| || |||| |||||||||| |||  ||||||||||||||||||| ||||||   |||||||||||||||  |||||||||    
T  8536540 acagttgtagcctaagaggcaacttttattcattagataatattttagagagtttcctcaatttctggtggattccggaatcctattttca 8536450  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 155 - 243
Target Start/End: Complemental strand, 2472837 - 2472745
Alignment:
Q  155 taacttttatttattcaataatattttagagagtttt-ctcaatt---ggtggattccggaaatctattttcacaaatttttcgcttgcaaac 243  Q
    ||||||||||| | ||||||||||||||| ||||||| |||||||   ||||||||||||||  |||||||||||| ||| ||| ||||||||    
T  2472837 taacttttattcaatcaataatattttagtgagtttttctcaatttctggtggattccggaaccctattttcacaagtttgtcggttgcaaac 2472745  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 225
Target Start/End: Complemental strand, 1320215 - 1320124
Alignment:
Q  137 cagttgtagcatatgaggtaacttttatttattcaataatattttagagagttttctcaat---tggtggattccggaaatctattttcaca 225  Q
    |||||||||  || ||| ||||||||||| |||||||||||||||||||| ||||||| ||   |||||||||| ||||  |||||||||||    
T  1320215 cagttgtaggctaagagataacttttattcattcaataatattttagagaattttctctatttctggtggattctggaaccctattttcaca 1320124  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 197
Target Start/End: Original strand, 52708798 - 52708837
Alignment:
Q  158 cttttatttattcaataatattttagagagttttctcaat 197  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  52708798 cttttttttattcaataatattttagagagttttctcaat 52708837  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 167 - 243
Target Start/End: Complemental strand, 5324765 - 5324689
Alignment:
Q  167 attcaataatattttagagagttttctcaatt----ggtggattccggaaatctattttcacaaatttttcgcttgcaaac 243  Q
    |||||||||||||||  |||||||||||||||    ||||||||||    |||||||||||||||||| ||||||||||||    
T  5324765 attcaataatattttcaagagttttctcaattttctggtggattcc----atctattttcacaaatttatcgcttgcaaac 5324689  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 238
Target Start/End: Complemental strand, 365766 - 365654
Alignment:
Q  130 agctcaacagttgtagcatatgaggtaacttttatttattcaataatattttagagagttttctcaat----tggtggattccggaaatctattttcaca 225  Q
    |||| |||||||||||| || ||| ||||||||||| | ||||||||||||  |||| ||||||| ||    ||||||||||  |||  |||||||||||    
T  365766 agcttaacagttgtagcctaagagataacttttattcaatcaataatatttctgagacttttctctattttctggtggattcaagaaccctattttcaca 365667  T
Q  226 aatttttcgcttg 238  Q
    | ||| |||||||    
T  365666 agtttgtcgcttg 365654  T

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Target: scaffold0251 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 156 - 226
Target Start/End: Original strand, 9644 - 9717
Alignment:
Q  156 aacttttatttattcaataatattttagagagttttctcaat---tggtggattccggaaatctattttcacaa 226  Q
    |||||||||| |||||||||||||| ||||||||||||||||   ||||||||| |||||  ||||||||||||    
T  9644 aacttttattcattcaataatatttcagagagttttctcaatttctggtggatttcggaaccctattttcacaa 9717  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 18252340 - 18252400
Alignment:
Q  138 agttgtagcatatgaggtaacttttatttattcaataatattttagagagttttctcaatt 198  Q
    ||||||||| || ||| |||||| |||| |||||||||||||||| |||||||||||||||    
T  18252340 agttgtagcctaagagataacttctattcattcaataatattttaaagagttttctcaatt 18252400  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 26140298 - 26140373
Alignment:
Q  169 tcaataatattttagagagttttctcaa---ttggtggattccggaaatctattttcacaaatttttcgcttgcaa 241  Q
    ||||||||||||||||||||||||||||   |||||||||||  |||  ||||||||| || ||| ||||||||||    
T  26140298 tcaataatattttagagagttttctcaatttttggtggattcttgaaccctattttcataagtttgtcgcttgcaa 26140373  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 243
Target Start/End: Complemental strand, 19497441 - 19497361
Alignment:
Q  167 attcaataatattttagagagtttt-ctcaatt---ggtggattccggaaatctattttcacaaatttttcgcttgcaaac 243  Q
    |||||||||||||||||||| |||| |||||||   | |||||| |||||  |||||||||||| ||| ||||||||||||    
T  19497441 attcaataatattttagagattttttctcaatttttgatggatttcggaaccctattttcacaagtttgtcgcttgcaaac 19497361  T

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Target: scaffold0240 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 198
Target Start/End: Original strand, 15968 - 16031
Alignment:
Q  135 aacagttgtagcatatgaggtaacttttatttattcaataatattttagagagttttctcaatt 198  Q
    |||||||||||| || || | |||||||||| |||||||||||||||| |||||||||| ||||    
T  15968 aacagttgtagcctacgaagaaacttttattcattcaataatattttatagagttttctaaatt 16031  T

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Target: scaffold0240; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 191
Target Start/End: Original strand, 1573 - 1634
Alignment:
Q  130 agctcaacagttgtagcatatgaggtaacttttatttattcaataatattttagagagtttt 191  Q
    |||| |||||||||| | || |||| |||||||||| ||| |||||||||||||| ||||||    
T  1573 agcttaacagttgtaacctaagaggaaacttttattcattgaataatattttagatagtttt 1634  T

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Target: scaffold0240; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 15902 - 15954
Alignment:
Q  130 agctcaacagttgtagcatatgaggtaacttttatttattcaataatatttta 182  Q
    |||| |||||||||||| || || | |||||||||| ||||||||||||||||    
T  15902 agcttaacagttgtagcctaggaagaaacttttattaattcaataatatttta 15954  T

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Target: scaffold0054 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 192
Target Start/End: Original strand, 49243 - 49300
Alignment:
Q  135 aacagttgtagcatatgaggtaacttttatttattcaataatattttagagagttttc 192  Q
    |||||||||||  || ||||||||||||||| ||| ||| ||||||||||||||||||    
T  49243 aacagttgtagtctaagaggtaacttttattcatttaattatattttagagagttttc 49300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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