View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14520_low_23 (Length: 234)
Name: NF14520_low_23
Description: NF14520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14520_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 39 - 220
Target Start/End: Complemental strand, 6113099 - 6112923
Alignment:
| Q |
39 |
tcattcgccatattacaatatgagtttgattaaaattttgagaaaagcatagatagcccattaacacgacacgcttatagttggtgaaacatatacagga |
138 |
Q |
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| T |
6113099 |
tcattcgccatgttgcaatatgagtttgattaaaattttgagaaaagcatagatagcccattaacaca-----cttatagttggtgaaacatatacagga |
6113005 |
T |
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| Q |
139 |
tggtgatagattcattttcacatctacgtactgttgtttgggacttgtgtgttgaaggttgaatactaatgcaattgttctc |
220 |
Q |
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| T |
6113004 |
tggtgatagattcattttcacatctacgtactgttgttagggacttgtgtgttgaaggttgaatactaatgcaattgttctc |
6112923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 6113156 - 6113121
Alignment:
| Q |
1 |
gatgttgataactaattcgaaggaactgagtccaag |
36 |
Q |
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| T |
6113156 |
gatgttgataactaattcgaaggaactgagtccaag |
6113121 |
T |
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