View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14520_low_25 (Length: 229)
Name: NF14520_low_25
Description: NF14520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14520_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 5 - 215
Target Start/End: Original strand, 44104969 - 44105178
Alignment:
| Q |
5 |
actcaagtggagaaaacgaagatcatgcccacagaccacggtagaagaaaaagcaatcattgctgattggatgaaagcagagaaacaatgacgttgatac |
104 |
Q |
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| T |
44104969 |
actcaagtggagaaaacgaagatcatgcccacagaccacggtagaagaaaaagcaatcattgctgattggatgaaagcagagaaacaatgacgttgatac |
44105068 |
T |
|
| Q |
105 |
agtagttatagaactactacgatttctgttctataaaaatggtcactctcagcttggagccatcagcagatattggaaaggcatccagggcatgatcttg |
204 |
Q |
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| T |
44105069 |
ag-agttatagaactactacgatttctgttctataaaaatggtcactctcagcttggagccatcagcagatattggaaaggcatccagggcatgatcttg |
44105167 |
T |
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| Q |
205 |
agtaacaaata |
215 |
Q |
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| T |
44105168 |
agtaacaaata |
44105178 |
T |
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