View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14520_low_27 (Length: 224)
Name: NF14520_low_27
Description: NF14520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14520_low_27 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 134; Significance: 7e-70; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 6 - 139
Target Start/End: Complemental strand, 5390990 - 5390857
Alignment:
| Q |
6 |
atatgcccatgtaccagctatggcaccaagagttgttgataccaaatatatccatattcctctatattcatggtgcacaatagcaggccctaagctcctt |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5390990 |
atatgcccatgtaccagctatggcaccaagagttgttgataccaaatatatccatattcctctatattcatggtgcacaatagcaggccctaagctcctt |
5390891 |
T |
|
| Q |
106 |
gcaggattcattgatgctccagtaattggcctgt |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
5390890 |
gcaggattcattgatgctccagtaattggcctgt |
5390857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 6 - 139
Target Start/End: Complemental strand, 5404292 - 5404159
Alignment:
| Q |
6 |
atatgcccatgtaccagctatggcaccaagagttgttgataccaaatatatccatattcctctatattcatggtgcacaatagcaggccctaagctcctt |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5404292 |
atatgcccatgtaccagctatggcaccaagagttgttgataccaaatatatccatattcctctatattcatggtgcacaatagcaggccctaagctcctt |
5404193 |
T |
|
| Q |
106 |
gcaggattcattgatgctccagtaattggcctgt |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
5404192 |
gcaggattcattgatgctccagtaattggcctgt |
5404159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 140 - 205
Target Start/End: Complemental strand, 5390833 - 5390768
Alignment:
| Q |
140 |
catgattaagttccaagttatttgaccaaactgaattgtgacgacatgaatgtaatcgtattgaag |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5390833 |
catgattaagttccaagttatttgaccaaactgaattgtgacgacatgaatgtaatcgtattgaag |
5390768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 46 - 125
Target Start/End: Complemental strand, 5398554 - 5398475
Alignment:
| Q |
46 |
accaaatatatccatattcctctatattcatggtgcacaatagcaggccctaagctccttgcaggattcattgatgctcc |
125 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| ||||||||||||||||| |
|
|
| T |
5398554 |
accatatatatccatattcctctatattcatggtgcacaatagctggtcctaagcttcttgctggattcattgatgctcc |
5398475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 46 - 125
Target Start/End: Original strand, 5406570 - 5406649
Alignment:
| Q |
46 |
accaaatatatccatattcctctatattcatggtgcacaatagcaggccctaagctccttgcaggattcattgatgctcc |
125 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| ||||||||||||||||| |
|
|
| T |
5406570 |
accatatatatccatattcctctatattcatggtgcacaatagctggtcctaagcttcttgctggattcattgatgctcc |
5406649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 142
Target Start/End: Complemental strand, 36269244 - 36269148
Alignment:
| Q |
46 |
accaaatatatccatattcctctatattcatggtgcacaatagcaggccctaagctccttgcaggattcattgatgctccagtaattggcctgtcat |
142 |
Q |
| |
|
||||| ||||||||||||||||| |||||| ||| | || |||||| |||| || ||||| ||||||||||||||||| || ||||| ||||||| |
|
|
| T |
36269244 |
accaagtatatccatattcctctgtattcactgtgtagaagagcaggtcctatacttcttgctggattcattgatgctcctgtgattggtctgtcat |
36269148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University