View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14520_low_3 (Length: 541)
Name: NF14520_low_3
Description: NF14520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14520_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-106; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 270 - 524
Target Start/End: Original strand, 8964278 - 8964533
Alignment:
| Q |
270 |
aaggataaggttactatggttgaaatccaaatgcatggttagtggtggttaatggtnnnnnnnn-caagttttggaataatgtaagtactatatgagttt |
368 |
Q |
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| T |
8964278 |
aaggacaaggttactatggttcaaatccaaatgcatggttagtggtggttaatggtaaaaaaaaacaagtattggaataatgtaagtactatttgagttt |
8964377 |
T |
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| Q |
369 |
aatctttatgtgcaccttggaagaatacattactagtgcactttgttggaaaaaatatggtggcagattctttgaaacaagattaagaaagtttattggg |
468 |
Q |
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| T |
8964378 |
aatcttgatgtgcaccttggaagaagacattactagtgcactttgttggaaaaaatatggtggcagattctttgaaacaagattaagaaagtttattggg |
8964477 |
T |
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| Q |
469 |
cgagagatccatcttgtggatctttatgcatggttcactttacatagaggaagatt |
524 |
Q |
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| T |
8964478 |
cgagagatccatcttgtggatctttatgcatggttcactttatatagaggaagatt |
8964533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 8964022 - 8964238
Alignment:
| Q |
18 |
agagatattactggatttggtagtattatgaatgtttgtgaacaattgtttaatgttaatattcaaaactctaatgtcgagtttaatcgatggtaagtca |
117 |
Q |
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| T |
8964022 |
agagatattattgaatttggtagtattatgaatgtttgtgaacaattgtttaatgttaatattcaaaactctaatgtcgagtttaatcgaaggcaagtca |
8964121 |
T |
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| Q |
118 |
ctgggtcactcagacttgaataagatatcgtcattttatgctagctcccacttgtttattgatgcaccgtcatatagttataccttgatttctaatgaaa |
217 |
Q |
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| T |
8964122 |
ctaggtcgctcagacttgaataaaatatcgtcattttatgctagctcccacttgtttattgatgcaccatcatgtagttataccttgatttctaatgaaa |
8964221 |
T |
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| Q |
218 |
tgttataagtttgttcc |
234 |
Q |
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| T |
8964222 |
tgttataagtttgttcc |
8964238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 364 - 524
Target Start/End: Complemental strand, 8956012 - 8955852
Alignment:
| Q |
364 |
agtttaatctttatgtgcaccttggaagaatacattactagtgcactttgttggaaaaaatatggtggcagattctttgaaacaagattaagaaagttta |
463 |
Q |
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| T |
8956012 |
agttaaatcttgatgtgcaccttggaagaatacattactagtgcactttgctggaaaaaatatggtggcaaattctttgaaacaagattaagaaagttta |
8955913 |
T |
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| Q |
464 |
ttgggcgagagatccatcttgtggatctttatgcatggttcactttacatagaggaagatt |
524 |
Q |
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| T |
8955912 |
ttgggcgagagatccatcttgtggatctttatgcatggttcactttacatagaggaagatt |
8955852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 34 - 230
Target Start/End: Original strand, 8994863 - 8995058
Alignment:
| Q |
34 |
ttggtagtattatgaatgtttgtgaacaattgtttaatgttaatattcaaaactctaatgtcgagtttaatcgatggtaagtcactgggtcactcagact |
133 |
Q |
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| T |
8994863 |
ttggtagtattatgaatgtttgtgaattgttgtttaatgttaatattcaaaactctcatgtcgaatttaaacggaggcaagtcagtgggttgct-agtct |
8994961 |
T |
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| Q |
134 |
tgaataagatatcgtcattttatgctagctcccacttgtttattgatgcaccgtcatatagttataccttgatttctaatgaaatgttataagtttg |
230 |
Q |
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| T |
8994962 |
tagcgaaggtatcatcattttatgctagcttccacttgtttattgatgtaccatcatgtatttgtaccttgatttctaatgaaatgttattagtttg |
8995058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 34 - 230
Target Start/End: Original strand, 9019310 - 9019505
Alignment:
| Q |
34 |
ttggtagtattatgaatgtttgtgaacaattgtttaatgttaatattcaaaactctaatgtcgagtttaatcgatggtaagtcactgggtcactcagact |
133 |
Q |
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| T |
9019310 |
ttggtagtattatgaatgtttgtgaattgttgtttaatgttaatattcaaaactctcatgtcgaatttaaacggaggcaagtcagtgggttgct-agtct |
9019408 |
T |
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| Q |
134 |
tgaataagatatcgtcattttatgctagctcccacttgtttattgatgcaccgtcatatagttataccttgatttctaatgaaatgttataagtttg |
230 |
Q |
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| T |
9019409 |
tagcgaaggtatcatcattttatgctagcttccacttgtttattgatgtaccatcatgtatttgtaccttgatttctaatgaaatgttattagtttg |
9019505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 8991300 - 8991389
Alignment:
| Q |
14 |
gagcagagatattactggatttggtagtattatgaatgtttgtgaacaattgtttaatgttaatattcaaaactctaatgtcgagtttaa |
103 |
Q |
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| T |
8991300 |
gagcagagacattactgaatttggtagcattatgaatgtttgtgaatagttattgaatgttagttttcaaaactatcatgtcgagtttaa |
8991389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 9015747 - 9015836
Alignment:
| Q |
14 |
gagcagagatattactggatttggtagtattatgaatgtttgtgaacaattgtttaatgttaatattcaaaactctaatgtcgagtttaa |
103 |
Q |
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| T |
9015747 |
gagcagagacattactgaatttggtagcattatgaatgtttgtgaatagttattgaatgttagttttcaaaactatcatgtcgagtttaa |
9015836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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