View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14520_low_6 (Length: 432)
Name: NF14520_low_6
Description: NF14520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14520_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 23215538 - 23215933
Alignment:
| Q |
1 |
tacagtggttttaacctcagttcgcttcaaaatctgaccaatgggttcatccatttctgccagcttgcgaacagactttacaagactagcaatttgnnnn |
100 |
Q |
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| T |
23215538 |
tacagtggttttaacctcagttctcttcaaaatctgaccaatgggttcatccatttctgccagcttgcgaacagactttacaagactagcaatctgaaaa |
23215637 |
T |
|
| Q |
101 |
nnnncaaattaaggttaggtaaaaacattcttgttgaaagagaaaacatcatacaacttaagattagattcaagctatgaagctcggatacgtagtaggc |
200 |
Q |
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||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
23215638 |
aca-caaatcaaggttaggtaaaaactttcttgttgaaagagaaaacatcatacaacttaagattagcttcaagctatga-----------------ggc |
23215719 |
T |
|
| Q |
201 |
acacacaggtacaaagatacatgaaatttttaaaattcacgatatgatggagcttggatacgttaacgaaataagatagcaaaacttgtatagatatgta |
300 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23215720 |
acacacaggtacaaagatacataaaatttttaaaattcacgatatgatggagcttggatacgttaacgaaataagatagcaaaacttgtatagatatgta |
23215819 |
T |
|
| Q |
301 |
atacttataaagaaagagacatttgatcatttctcattattatgtttacgatgatcattattaacagaaaaatgtctgcgatcatataagaaataataaa |
400 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23215820 |
atacttataaagaaagagaca-ttgatcatttctcattattatgtttacgatgatcattattaacagaaaaatgtctgcgatcatataagaaataataaa |
23215918 |
T |
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