View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14521_high_1 (Length: 340)
Name: NF14521_high_1
Description: NF14521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14521_high_1 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 20 - 340
Target Start/End: Original strand, 42008122 - 42008431
Alignment:
| Q |
20 |
tcccgaaagaagcttcgctagtgtaactataagtgtgtgaactgaattcttgagtgaaacaactaccctacctaaatatgttgacggtcacatgttataa |
119 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
42008122 |
tcccgaaagaagcttcgttagtgtaactataagtgtgtgaactgaattcttgagtgaaacaactaccctatctaaatatgttgacggtcacatgttataa |
42008221 |
T |
|
| Q |
120 |
tgtcataaatgtcaaggtgacatgactcacatgagcgagcaaacatatttatttatttttgacgaaagtgagcaaacattattatcaattggtgttttct |
219 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
42008222 |
tgtcataaatgtcaaagtgacatgactcacatgagcgagcaaacatatttatttatttttgacgaaagtgagcaaacattattatcaatcggtgttttct |
42008321 |
T |
|
| Q |
220 |
caaaagtcttggtgtacacaaaaagctgaccaagaatgaaaggaacaatgtcatcgttgcaaatgcacttcttccattcaatgaataccaaaagcaaact |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
42008322 |
caaaagtcttggtgtacacaaaaagctgaccaagaatgaaaggaacaatgtcatcgttgcaaatgcacttc----------tgaataccaaaagcaaact |
42008411 |
T |
|
| Q |
320 |
ggtcagcttgcttttctccgc |
340 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
42008412 |
-gtcagcttgcttttctccgc |
42008431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University