View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14521_low_3 (Length: 332)
Name: NF14521_low_3
Description: NF14521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14521_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 36634473 - 36634787
Alignment:
| Q |
1 |
tttgttacgttttttattgaaaacattcttgacttgaactccacagtagaaaaattgttttgctgaaattaacattcactctcttatttgtgatagagac |
100 |
Q |
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| T |
36634473 |
tttgttacgttttttattgaaaacattcttgacttgaactccacagtagaaaaattgttttgctgaaattaacattcactctcttatttgtgatagagac |
36634572 |
T |
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| Q |
101 |
tatatgaccacggggctaggaatttttgggtacataacacaggtccacttggatgcttgggtcaaaatgttgccacatttggccatgataaatcaaagat |
200 |
Q |
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| T |
36634573 |
tatatgaccacggggctaggaatttttgggtacataacacaggtccacttggatgcttgggtcaaaatgttgccacatttggccatgataaatcaaagat |
36634672 |
T |
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| Q |
201 |
tgatgaactaggatgtcttggtgcacacaaccaagctgctaaggcctttaatctacagttgcaagctttgtgggcaaaattgcagggccagtatctagat |
300 |
Q |
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| T |
36634673 |
tgatgaactaggatgtcttggtgcacacaaccaagctgctaaggcctttaatctacagttgcaagctttgtgggcaaaattgcagggccagtatctagat |
36634772 |
T |
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| Q |
301 |
ctaaatgttacatat |
315 |
Q |
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| T |
36634773 |
ctaaatgttacatat |
36634787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 50 - 315
Target Start/End: Original strand, 36639287 - 36639555
Alignment:
| Q |
50 |
aaaaattgttttgctgaaattaacattc-actctcttatttgtg--atagagactatatgaccacggggctaggaatttttgggtacataacacaggtcc |
146 |
Q |
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| T |
36639287 |
aaaaatagttatgcagaaattgacattccactctcttatttgtgtgacagagactgtatgacatcggggtcaggaattttcggatacataacgcgagtcc |
36639386 |
T |
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| Q |
147 |
acttggatgcttgggtcaaaatgttgccacatttggccatgataaatcaaagattgatgaactaggatgtcttggtgcacacaaccaagctgctaaggcc |
246 |
Q |
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| T |
36639387 |
acttggatgcttggctcattttatttccctatttggcactgatccatcgaaacttgatgaactaggatgtcttcgttaacataacttagctgctaaagct |
36639486 |
T |
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| Q |
247 |
tttaatctacagttgcaagctttgtgggcaaaattgcagggccagtatctagatctaaatgttacatat |
315 |
Q |
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| T |
36639487 |
tttaatcaatatcttcaagatttctgcagtaaattgcagggccagtatccagatgtaaatgttacatat |
36639555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 91 - 257
Target Start/End: Complemental strand, 46937462 - 46937296
Alignment:
| Q |
91 |
tgatagagactatatgaccacggggctaggaatttttgggtacataacacaggtccacttggatgcttgggtcaaaatgttgccacatttggccatgata |
190 |
Q |
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||||||||||||||||| | |||||||| |||| ||| |||| || |||||||| ||||||||||| | ||| |||||||||| |||||| |||| |
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| T |
46937462 |
tgatagagactatatgatgagggggctagatatttctggatacacaatacaggtcctcttggatgcttagctcagaatgttgccaaatttggaactgatc |
46937363 |
T |
|
| Q |
191 |
aatcaaagattgatgaactaggatgtcttggtgcacacaaccaagctgctaaggcctttaatctaca |
257 |
Q |
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||||||| ||||||||||||||||| || ||| || |||||||||| ||| ||||||| ||||| |
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| T |
46937362 |
catcaaagcttgatgaactaggatgtgttagtgggcataaccaagctgttaaaacctttaacctaca |
46937296 |
T |
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