View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14521_low_4 (Length: 320)

Name: NF14521_low_4
Description: NF14521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14521_low_4
NF14521_low_4
[»] chr7 (1 HSPs)
chr7 (1-293)||(47116595-47116887)


Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 47116887 - 47116595
Alignment:
Q  1 tgataaaatataactattgtaattacctgagaagcgatgaaacaaaacaatgtcagnnnnnnngagatatcataaggaaatgaaataacaagggtatgag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||    
T  47116887 tgataaaatataactattgtaattacctgagaagcgatgaaacaaaacaatgtcagaaaaaaagagatatcataaggaaatgaaataacaagggtatgag 47116788  T
Q  101 gaagcttggagtggtgtccatctattgtggaaggattggggattcgttcattaacataacatcattgaatgagatgtatgacgtggaaattttctttgta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  47116787 gaagcttggagtggtgtccatctattgtggaaggattggggattcgttcattaacataacatcattgaatgagatgtatgacgtggaacttttctttgta 47116688  T
Q  201 actgtctccccgaactttcagtaattaataccacaattagcacaaataatttctttcattttctctttccttaccagttttccaccaaataat 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47116687 actgtctccccgaactttcagtaattaataccacaattagcacaaataatttctttcattttctctttccttaccagttttccaccaaataat 47116595  T

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