View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14521_low_9 (Length: 266)
Name: NF14521_low_9
Description: NF14521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14521_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 47 - 250
Target Start/End: Original strand, 54786602 - 54786804
Alignment:
| Q |
47 |
cacagggttggaggtggaaggtatacttgggatccaaaaattaacttcacaaattgggcaagtaatgagcacttttatcagggtgattggctatgtaagt |
146 |
Q |
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| T |
54786602 |
cacagggttggaggtggaaggtatacttgggatccaaaaattaacttcacaaattgggcaagtaatgagcacttttaccagggtgattggctatgtaagt |
54786701 |
T |
|
| Q |
147 |
tcgttccttcctgacacatgttgattaatatcattgcaaataatttatttattattaactgaagtgaattctcttttttgtaaatagattttggttttga |
246 |
Q |
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| T |
54786702 |
tcgttccttcctgacacatgttgattaatatcattgcaaat-atttatttattattaactgaagtgaattctcttttttgtaaatagattttggttttga |
54786800 |
T |
|
| Q |
247 |
taag |
250 |
Q |
| |
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|||| |
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| T |
54786801 |
taag |
54786804 |
T |
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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 25933062 - 25933113
Alignment:
| Q |
1 |
aaccatttccctgaactttctccattataacagtctcattgagacacacagg |
52 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25933062 |
aaccatatccctgaactttctccattataacagtctcattgagacacacagg |
25933113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 26422136 - 26422085
Alignment:
| Q |
1 |
aaccatttccctgaactttctccattataacagtctcattgagacacacagg |
52 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26422136 |
aaccatatccctgaactttctccattataacagtctcattgagacacacagg |
26422085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 13784035 - 13784086
Alignment:
| Q |
1 |
aaccatttccctgaactttctccattataacagtctcattgagacacacagg |
52 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13784035 |
aaccatatccctgaactttctccattataacagtctcattgagacacacagg |
13784086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 23486691 - 23486640
Alignment:
| Q |
1 |
aaccatttccctgaactttctccattataacagtctcattgagacacacagg |
52 |
Q |
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|||||| ||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
23486691 |
aaccatatccctgaactttctccattatcacaatctcattgagacacacagg |
23486640 |
T |
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