View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14522_high_1 (Length: 448)
Name: NF14522_high_1
Description: NF14522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14522_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 14 - 373
Target Start/End: Complemental strand, 29643882 - 29643520
Alignment:
| Q |
14 |
cataggaagagaagtaccatgattgttccagcagctgatgcagctcttgctgttgcatattctcctgcacaaggaaaaaatgtacatgaacatcagcaat |
113 |
Q |
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| T |
29643882 |
cataggaagagaagtaccatgattgttccagcagctgatgcagctcttgctgttgcatattctcctgcacaaggaaaaaatgtacatgaacatcagaaat |
29643783 |
T |
|
| Q |
114 |
gtcaatttcatgtagctgtcttgtgttaaagttttcttgataaaaaatcata-gagtttgttatcaaccatttatcaaaactagacgatgacaatatttt |
212 |
Q |
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| T |
29643782 |
ttcaatttcatgtagctgtcttgtgttaaagttttcttaataaaaaatcataagagtttgttatcaaccatttatcaaaactagacgatgacaatatttt |
29643683 |
T |
|
| Q |
213 |
aagaattactaatgtctaatcacacttaatttctgtgtaatagcttatcaatagaagttacagaactagaaaccaagttatgataaacagtttgagtaag |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29643682 |
aagaattactaatgtctaatcacacttaatttctgtgtaatagcttatcgatagaagttacagaactagaaaccaagttatgataaacagtttgagtaag |
29643583 |
T |
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| Q |
313 |
tgcgtaaagcataagcacttatc--gtatgagtgttcatgtatatgttatttctataacaaaa |
373 |
Q |
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| T |
29643582 |
cacgtaaagcataagcacttatcatatatgagtgttcatttatatgttattcctataacaaaa |
29643520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 373
Target Start/End: Complemental strand, 42817544 - 42817480
Alignment:
| Q |
309 |
taagtgcgtaaagcataagcacttatcgtatgagtgttcatgtatatgttatttctataacaaaa |
373 |
Q |
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| T |
42817544 |
taagtgcttatagcataagcgtttatcatataagtgttgatttatatgttatttctataccaaaa |
42817480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 373
Target Start/End: Original strand, 4200131 - 4200195
Alignment:
| Q |
309 |
taagtgcgtaaagcataagcacttatcgtatgagtgttcatgtatatgttatttctataacaaaa |
373 |
Q |
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|||||||||| |||||||||||||||| | | |||||| || |||| ||||||| |||||||||| |
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| T |
4200131 |
taagtgcgtatagcataagcacttatcatctaagtgtttatatataagttatttttataacaaaa |
4200195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 375
Target Start/End: Complemental strand, 30207723 - 30207672
Alignment:
| Q |
324 |
taagcacttatcgtatgagtgttcatgtatatgttatttctataacaaaaaa |
375 |
Q |
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| T |
30207723 |
taagcacttatcatataagtgcttatgtatatgttagttctataacaaaaaa |
30207672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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