View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14522_high_3 (Length: 371)
Name: NF14522_high_3
Description: NF14522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14522_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 76 - 360
Target Start/End: Complemental strand, 24314326 - 24314041
Alignment:
| Q |
76 |
ataaattaaatcaagaaacattaattaccttaatgatcaccacaaaacaaactaattaatgnnnnnnnnnn-aattttaaaaaagtaactcctattcaat |
174 |
Q |
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| T |
24314326 |
ataaattaaatcaagaaacattaattaccttaatgatcaccacaaaacaaactaattaatgtttttttttttaattttaaaaaagtaactcctattcaat |
24314227 |
T |
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| Q |
175 |
taaccttacaatcttatttcttctatttcacatatattcaagtcttatcataattacaaggtacttcaatttgccccccttaaattctgttgtgaaatca |
274 |
Q |
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| T |
24314226 |
taaccttacaatcttatttcttctatttcacatatattcaagtcttatcataattacaaggtacttcaatttgccccccttaaattctgttgtgaaatca |
24314127 |
T |
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| Q |
275 |
ggcattcaatgataagatgtactttaccaatccatttagtgcatcacatgaagaacccctcacagctatcccaatttcatgcttca |
360 |
Q |
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| T |
24314126 |
ggcattcaatgataagatgtactttaccaatccatttagtgcatcacatgaagaacccctcacagctatcccaatttcatgcttca |
24314041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 21186393 - 21186450
Alignment:
| Q |
18 |
aaaaatacactatcgggatttctcgtaaaaattttcttcgcgtaatatagcattcctc |
75 |
Q |
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| T |
21186393 |
aaaaatacactatcgggatttctcgtgaaatttttcttcgcgtaaaatagcattcctc |
21186450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 33777245 - 33777187
Alignment:
| Q |
17 |
aaaaaatacactatcgggatttctcgtaaaaattttcttcgcgtaatatagcattcctc |
75 |
Q |
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| T |
33777245 |
aaaaaatacactatcgggatttctcgtgaaatttttcttcgcgtaatatagcattcctc |
33777187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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