View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14522_low_2 (Length: 412)
Name: NF14522_low_2
Description: NF14522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14522_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 18 - 403
Target Start/End: Original strand, 2440191 - 2440576
Alignment:
| Q |
18 |
ccatcaagagcgctattcgaagtttctggcctacaaaaaatttgagttagagaaaaatttccggttggaaggggacaaattatcagatattcaagcagtg |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2440191 |
ccatcaagagcgctattcgaagtttctggcctacaaaaaatttgagttagagaaaaatttccggttggaaggggacaaattatcagatattcaagcagtg |
2440290 |
T |
|
| Q |
118 |
ataacgaccagagggtggggagaattgacatcatttgcaaaagaggctagtacgacattagctaaagagttctttgcaaatgcatatattggtcctgcta |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2440291 |
ataacgaccagagggtggggagaattgacatcatttgcaaaagaggctagtacgacattagctaaagagttctttgcaaatgcatatattggtcttgcta |
2440390 |
T |
|
| Q |
218 |
aagaagatgggaactataagaatgatttgatgaaattcactatttttgttagagggaagaaggtgccatttcagggaaattatcaatcaattgtttaggc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2440391 |
aagaagatgggaactataagaatgatttgatgaaattcactagttttgttagagggaagaaggtgccatttcagggaaattatcaatcaattgtttaggc |
2440490 |
T |
|
| Q |
318 |
ttgagaactatgagcagcgttcatttgaagcaagaaatggcaagggatctaacattgatcatcaggagattcttagtactctgtgc |
403 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2440491 |
ttgagaactatgagcagtgttcatttgaagcaagaaatggcaagggatctaacattgatcatcaggagattcttagtactctgtgc |
2440576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 403
Target Start/End: Complemental strand, 41665676 - 41665289
Alignment:
| Q |
18 |
ccatcaagagcgctattcgaagtttctggcctacaaaaaatttgagttagagaaaaatttccggttggaaggggacaaattatcagatattcaagcagtg |
117 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||| |||| |||||| ||||||||| ||||||||||||||||||| ||||||||||| ||| || |
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| T |
41665676 |
ccatcaagagcgctattcgaagtttctaaccaacaaaaagtttgtgttagaaaaaaatttctggttggaaggggacaaattctcagatattcaggcaatg |
41665577 |
T |
|
| Q |
118 |
ataacgaccagagggtggggagaattgacatcatttgcaaaagaggctagtacgacattagctaaagagttctttgcaaatgcatatattggtcctgcta |
217 |
Q |
| |
|
||| | ||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||| | |
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| T |
41665576 |
atagtggccagaggatggggcaaattgacatcatttgcaaaagaggctagtgcgacattagctaaagagttctttgcaaatgcatatatgggtactgcca |
41665477 |
T |
|
| Q |
218 |
aagaagatgggaactataagaatgatttgatgaaattcactatttttgttagagggaagaaggtgccatttca--gggaaattatcaatcaattgtttag |
315 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||| |||||| ||||||||||||||||||||||| | |||||||||||||||||||| | |
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| T |
41665476 |
aagaagatgggaactatgagaatgatctgatgaaattcactagttttgtgagagggaagaaggtgccatttcatgagaaaattatcaatcaattgtttgg |
41665377 |
T |
|
| Q |
316 |
gcttgagaactatgagcagcgttcatttgaagcaagaaatggcaagggatctaacattgatcatcaggagattcttagtactctgtgc |
403 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||| |||||| ||||||||||||||||||||||||| ||| ||||||||| |
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| T |
41665376 |
gcttgagaactatgagcagtgttcgtttgaagcaagaaagaccaagggctctaacattgatcatcaggagattcgtagcactctgtgc |
41665289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 403
Target Start/End: Complemental strand, 41656914 - 41656528
Alignment:
| Q |
18 |
ccatcaagagcgctattcgaagtttctggcctacaaaaaatttgagttagagaaaaatttccggttggaaggggacaaattatcagatattcaagcagtg |
117 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||| |||| ||||| ||||| |||| |||||||||| ||||||| ||||||||||| | | || |
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|
| T |
41656914 |
ccatcaagagcactattcgaagtttctggccaacaaaaagtttgtattagaaaaaaaattccagttggaagggtacaaattctcagatattcaggaaatg |
41656815 |
T |
|
| Q |
118 |
ataacgaccagagggtggggagaattgacatcatttgcaaaagaggctagtacgacattagctaaagagttctttgcaaatgcatatattggtcctgcta |
217 |
Q |
| |
|
||| ||||||||| ||||| || ||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
41656814 |
atagtgaccagaggatggggggatctgacaacatttgcaaaagaggctagtgcc-cattagctaaagagttctttgcaaatgcatatctgggtcctgcta |
41656716 |
T |
|
| Q |
218 |
aagaagatgggaactataagaatgatttgatgaaattcactatttttgttagagggaagaaggtgccatttca--gggaaattatcaatcaattgtttag |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||| |||||||||||| | |||||||||||| ||||||| | |
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|
| T |
41656715 |
aagaagatgggaactataagaatgatttgatgaaattcactagttttgtcagaggcaagatggtgccatttcatgagaaaattatcaatcgattgtttgg |
41656616 |
T |
|
| Q |
316 |
gcttgagaactatgagcagcgttcatttgaagcaagaaatggcaagggatctaacattgatcatcaggagattcttagtactctgtgc |
403 |
Q |
| |
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||| ||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41656615 |
gctagagaactatgagcagtgttcatttgaagcaagaaaggcaaagggatctaacattgatcatcaggagattcttagtactctgtgc |
41656528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 19 - 402
Target Start/End: Complemental strand, 41706888 - 41706521
Alignment:
| Q |
19 |
catcaagagcgctattcgaagtttctggcctacaaaaaatttgagttagagaaaaatttccggttggaaggggacaaattatcagatattcaagcagtga |
118 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||| |||| | ||| ||||||||||||||||||||| ||||||| | |||||| |||| | ||| |
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|
| T |
41706888 |
catcaagagcgctattctgagtttctggccaacaaaaagtttgtggaagaaaaaaatttccggttggaagggaacaaattcttagatatccaagtaatga |
41706789 |
T |
|
| Q |
119 |
taacgaccagagggtggggagaattgacatcatttgcaaaagaggctagtacgacattagctaaagagttctttgcaaatgcatatattggtcctgctaa |
218 |
Q |
| |
|
|| | ||||||| |||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||| |
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|
| T |
41706788 |
tagtgtccagaggatgggtggaattgacatcgtttgcaaaagatgctagtacgacattagctaaagagttctttgcaaatgcatatcagggccctgc--- |
41706692 |
T |
|
| Q |
219 |
agaagatgggaactataagaatgatttgatgaaattcactatttttgttagagggaagaaggtgccatttcagg--gaaattatcaatcaattgtttagg |
316 |
Q |
| |
|
||||||||| ||||||||||||| |||| | ||||||||||| || |||||||| | | ||||||||| |||||||| || |
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|
| T |
41706691 |
---------------taagaatgagcgaatgaaattcactagttttatcagagggaagaatgttccatttcatgataatattatcaatgaattgtttggg |
41706607 |
T |
|
| Q |
317 |
cttgagaactatgagcagcgttcatttgaagcaagaaatggcaagggatctaacattgatcatcaggagattcttagtactctgtg |
402 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||| | |||||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
41706606 |
cttgagaactatgagcagtgttcctttgaagcaagaaaggccaagggttctaacattgatcatcaggagattcgtagtactctgtg |
41706521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 22 - 402
Target Start/End: Complemental strand, 41648817 - 41648438
Alignment:
| Q |
22 |
caagagcgctattcgaagtttctggcctacaaaaaatttgagttagagaaaaatttccggttggaaggggacaaattatcagatattcaagcagtgataa |
121 |
Q |
| |
|
||||| |||||||| |||||||| ||| ||||| |||| | |||| ||||| ||| | ||||||||||| |||| ||||||||||||||| ||| |
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|
| T |
41648817 |
caagaccgctattctaagtttcttgccagtaaaaagtttgtgctagaaaaaaaattctgtttggaaggggaagaattctcagatattcaagca---atag |
41648721 |
T |
|
| Q |
122 |
cgaccagagggtggggagaattgacatcatttgcaaaagaggctagtacgacattagctaaagagttctttgcaaatgcatatattggtcctgctaaaga |
221 |
Q |
| |
|
| ||||||| || | |||||||||| ||||| |||||||| |||| ||||| |||||||| || | ||||||||||||| |||||| ||||||| |
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|
| T |
41648720 |
tggccagaggatgagtggaattgacatagcttgcagaagaggcttgtacaacatttgctaaagaattgtctgcaaatgcatatcagggtcctactaaaga |
41648621 |
T |
|
| Q |
222 |
agatgggaactataagaatgatttgatgaaattcactatttttgttagagggaagaaggtgccatttcagg--gaaattatcaatcaattgtttaggctt |
319 |
Q |
| |
|
|||||||||| ||||||||||| | ||| ||||||||| |||||| |||||||||||||| |||||||| | |||||||||||||||||||| ||||| |
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|
| T |
41648620 |
agatgggaacaataagaatgatctaatgcaattcactagttttgtgagagggaagaaggttccatttcatgataaaattatcaatcaattgtttgggctt |
41648521 |
T |
|
| Q |
320 |
gagaactatgagcagcgttcatttgaagcaagaaatggcaagggatctaacattgatcatcaggagattcttagtactctgtg |
402 |
Q |
| |
|
|||||| ||||| || |||| |||||| ||||||| |||||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
41648520 |
gagaacaatgaggagtgttcctttgaaacaagaaagaccaagggctctaacattgatcatcaggagattcacagtactctgtg |
41648438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 19 - 402
Target Start/End: Complemental strand, 41716691 - 41716324
Alignment:
| Q |
19 |
catcaagagcgctattcgaagtttctggcctacaaaaaatttgagttagagaaaaatttccggttggaaggggacaaattatcagatattcaagcagtga |
118 |
Q |
| |
|
|||||| |||| ||||| ||||||||||| ||||||| |||| | ||| || ||||||| |||||||||| |||||| || |||||| | ||| |
|
|
| T |
41716691 |
catcaaaagcgttattctgagtttctggccaacaaaaagtttgtgggagaaaacaatttccagttggaagggagcaaattctcgtgtattcataaaatga |
41716592 |
T |
|
| Q |
119 |
taacgaccagagggtggggagaattgacatcatttgcaaaagaggctagtacgacattagctaaagagttctttgcaaatgcatatattggtcctgctaa |
218 |
Q |
| |
|
|| ||||||| |||| ||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
41716591 |
tagaatccagaggatgggtggaattgacatcgtttgcaaaagatgctagtacgacaatagctaaagagttctttgcaaatgcatatcagggtcctgctaa |
41716492 |
T |
|
| Q |
219 |
agaagatgggaactataagaatgatttgatgaaattcactatttttgttagagggaagaaggtgccatttcaggg--aaattatcaatcaattgtttagg |
316 |
Q |
| |
|
||||||| ||||||||||||| |||||| |||||||||||||| |||||||| | |||||||||||||| |||||||| |
|
|
| T |
41716491 |
------------------gaatgatcgaatgaaattcactagttttgtcagagggaagaaggttccatttcatgataaaattatcaatcaaatgtttagg |
41716410 |
T |
|
| Q |
317 |
cttgagaactatgagcagcgttcatttgaagcaagaaatggcaagggatctaacattgatcatcaggagattcttagtactctgtg |
402 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||| | |||||| |||||| |||||||||||||||||| ||||||| |||| |
|
|
| T |
41716409 |
cttgagaactatgagaagtgttcatttgaagcaagaaaggccaagggttctaacgttgatcatcaggagattcgtagtactttgtg |
41716324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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