View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14523_high_10 (Length: 215)
Name: NF14523_high_10
Description: NF14523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14523_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 47916626 - 47916825
Alignment:
| Q |
1 |
aagtgagtaactggtttgaagctttttgtgaagcttgttgattttagagagaacatcttcatgaactttccttaactgatccaattccttcgaattttcc |
100 |
Q |
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| T |
47916626 |
aagtgagtaactggtttgaagctttttgtgaagcttgttgattttagagagaacatcttcatgaactttccttaactgatccaattccttcgaattttcc |
47916725 |
T |
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| Q |
101 |
aaatttgaaacaatgtttggcgattcaattcacacaaccaagcagaaaaattcatgatgcaaaatccacacaacccatttcgcgcgtgggacatgctcat |
200 |
Q |
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| T |
47916726 |
aaatttgaaacaatgtttggcgattcaattcacacaaccaagcagaaaaattcatgatgcaaaatccacacaccccatttcgcgcgtgggacatgctcat |
47916825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 8 - 116
Target Start/End: Complemental strand, 11782628 - 11782520
Alignment:
| Q |
8 |
taactggtttgaagctttttgtgaagcttgttgattttagagagaacatcttcatgaactttccttaactgatccaattccttcgaattttccaaatttg |
107 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||| ||||||||||||||||||| |||||| ||| |
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| T |
11782628 |
taactggtttgaagctttttgtgaagcttgttgatttcagagagaacatcttcctgatctttccttaaccgatccaattccttcgaattctccaaaattg |
11782529 |
T |
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| Q |
108 |
aaacaatgt |
116 |
Q |
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| T |
11782528 |
aaacaatgt |
11782520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 135 - 200
Target Start/End: Complemental strand, 16348317 - 16348252
Alignment:
| Q |
135 |
caaccaagcagaaaaattcatgatgcaaaatccacacaacccatttcgcgcgtgggacatgctcat |
200 |
Q |
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| T |
16348317 |
caaccaagcagaacaattcatgatgcaaaatccacacaccccatttggcgcgtgggacatgctcat |
16348252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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