View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14523_low_1 (Length: 435)
Name: NF14523_low_1
Description: NF14523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14523_low_1 |
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| [»] chr5 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 10 - 435
Target Start/End: Complemental strand, 19611801 - 19611374
Alignment:
| Q |
10 |
gacatcatctctattctatttcaaatgctatgcttgtatcaaatttagcaagtctttagacatatacttgaaacatactgataggaacttgaaacacttt |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19611801 |
gacatcatctctattctatttcaaatgctatgcttgtatcaaatttagcaagtctttagacatatacttgaaacatactgataggaacttgaaacacttt |
19611702 |
T |
|
| Q |
110 |
ttaactccctaccaccaatattttaccctataatctgagaaaattctagttcacctatttttcctcctctgccaagaaacaacttttcaacttgtgaatt |
209 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
19611701 |
ttaactccctgccaccaatattttaccctataatctgagaaaattctagttcacctatttttcctcctctgccaagaaacaactttccaacttgtgaatt |
19611602 |
T |
|
| Q |
210 |
aaaagctctactaagtaccaatatacaatcagttatataagcatacacaacgagcatgtctaaagtgataacaatgacattagaatagaacaaaagagaa |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||| ||| |
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| T |
19611601 |
aaaagctctactaagtaccaatatacaatcagttatataagcatacataatgagcatgtctaaagtgataacattgacattagaatagaacaaaagggaa |
19611502 |
T |
|
| Q |
310 |
tttgaaaag--nnnnnnnnncacttttggattaacaaagtccaacataaaattgcagcctaaaagaatttagagaatttaaaattgaaccatagagaaga |
407 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
19611501 |
tttgaaaagaaaaaaaaaaacacttttggattaacaaagtccaacataaaattgcagcctaaaagaatttagagaatttaaaattgaagcatagagaaga |
19611402 |
T |
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| Q |
408 |
aattaaaggcagtgcagaaagagacctc |
435 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
19611401 |
aattaaaggcagtgcagaaagagacctc |
19611374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 105 - 435
Target Start/End: Complemental strand, 7600460 - 7600128
Alignment:
| Q |
105 |
actttttaactccctaccaccaatattttaccctataatctgagaaaattctagttcacctatttttcctcctctgccaagaaacaacttttcaacttgt |
204 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
7600460 |
actttttaactccctgccaccaatattttaccctataatctgagaaaattctagttcacctatttttcctcctctgccaagaaacaactttccaacttgt |
7600361 |
T |
|
| Q |
205 |
gaattaaaagctctactaagtaccaatatacaatcagttatataagcatacacaacgagcatgtctaaagtgataacaatgacattagaatagaacaaaa |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
7600360 |
gaattaaaagctctactaagtaccaatatacaatcagttatataagcatacataatgagcatgtctaaagtgataacattgacattagaatagaacaaaa |
7600261 |
T |
|
| Q |
305 |
gagaatttgaaaag--nnnnnnnnncacttttggattaacaaagtccaacataaaattgcagcctaaaagaatttagagaatttaaaattgaaccataga |
402 |
Q |
| |
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| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
7600260 |
gggaatttgaaaagaaaaaaaaaaacacttttggattaacaaagtccaacataaaattgcagcctaaaagaatttagagaatttaaaattgaagcataga |
7600161 |
T |
|
| Q |
403 |
gaagaaattaaaggcagtgcagaaagagacctc |
435 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
7600160 |
gaagaaattaaaggcagtgcagaaagagacctc |
7600128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 102 - 435
Target Start/End: Complemental strand, 23362148 - 23361813
Alignment:
| Q |
102 |
aacactttttaactccctaccaccaatattttaccctataatctgagaaaattctagttcacctatttttcctcctctgccaagaaacaacttttcaact |
201 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
23362148 |
aacactttttaactccctgccaccaatattttaccctataatctgagaaaattctagttcacctatttttcctcctctgccaagaaacaactttccaact |
23362049 |
T |
|
| Q |
202 |
tgtgaattaaaagctctactaagtaccaatatacaatcagttatataagcatacacaacgagcatgtctaaagtgataacaatgacattagaatagaaca |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
23362048 |
tgtgaattaaaagctctactaagtaccaatatacaatcagttatataagcatacataacgagcatgtctaaagtgataacatttacattagaatagaaca |
23361949 |
T |
|
| Q |
302 |
aaagagaatttgaaaag--nnnnnnnnncacttttggattaacaaagtccaacataaaattgcagcctaaaagaatttagagaatttaaaattgaaccat |
399 |
Q |
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|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
23361948 |
aaagggaatttgaaaaggaaaaaaaaaacacttttggattaacaaagtccaacataaaattgcagcctaaaagaatttagagaatttaaaattgaagcat |
23361849 |
T |
|
| Q |
400 |
agagaagaaattaaaggcagtgcagaaagagacctc |
435 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |
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| T |
23361848 |
agagaagaaattaaaggcattgcagaaagagacctc |
23361813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 249
Target Start/End: Complemental strand, 47351702 - 47351668
Alignment:
| Q |
215 |
ctctactaagtaccaatatacaatcagttatataa |
249 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |
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| T |
47351702 |
ctctactaaataccaatatacaatcagttatataa |
47351668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 105 - 435
Target Start/End: Original strand, 28462062 - 28462395
Alignment:
| Q |
105 |
actttttaactccctaccaccaatattttaccctataatctgagaaaattctagttcacctatttttcctcctctgccaagaaacaacttttcaacttgt |
204 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
28462062 |
actttttaactccctgccaccaatattttaccctataatctgagaaaattctagttcacctatttttcctcctctgccaagaaacaactttccaacttgt |
28462161 |
T |
|
| Q |
205 |
gaattaaaagctctactaagtaccaatatacaatcagttatataagcatacacaacgagcatgtctaaagtgataacaatgacattagaatagaacaaaa |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
28462162 |
gaattaaaagctctactaagtaccaatatacaatcagttatataagcatacataatgagcatgtctaaagtgataacattgacattagaatagaacaaaa |
28462261 |
T |
|
| Q |
305 |
gagaatttgaaaag---nnnnnnnnncacttttggattaacaaagtccaacataaaattgcagcctaaaagaatttagagaatttaaaattgaaccatag |
401 |
Q |
| |
|
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
28462262 |
gggaatttgaaaagaaaaaaaaaaaacacttttggattaacaaagtccaacataaaattgcagcctaaaagaatttagagaatttaaaattgaagcatag |
28462361 |
T |
|
| Q |
402 |
agaagaaattaaaggcagtgcagaaagagacctc |
435 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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|
| T |
28462362 |
agaagaaattaaaggcagtgcagaaagagacctc |
28462395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 102 - 435
Target Start/End: Complemental strand, 45402560 - 45402226
Alignment:
| Q |
102 |
aacactttttaactccctaccaccaatattttaccctataatctgagaaaattctagttcacctatttttcctcctctgccaagaaacaacttttcaact |
201 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||| |
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|
| T |
45402560 |
aacactttttaactccctgccaccaatattttaccctataatatgagaaatttctagttcacctattttacctcctctgccaagaaacaactttccaact |
45402461 |
T |
|
| Q |
202 |
tgtgaattaaaagctctactaagtaccaatatacaatcagttatataagcatacacaacgagcatgtctaaagtgataacaatgacattagaatagaaca |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
45402460 |
tgtgaattaaaagctctactaagtaccaatatacaatcagttatataagcatacataatgagcatgtctaaagtgataacattgacattagaatagaaca |
45402361 |
T |
|
| Q |
302 |
aaagagaatttgaaaag-nnnnnnnnncacttttggattaacaaagtccaacataaaattgcagcctaaaagaatttagagaatttaaaattgaaccata |
400 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
45402360 |
aaagggaatttgaaaagaaaaaaaaaacacttttggattaacaaagtccaacataaaattgcagcctaaaagaatttagagaatttaaaattgaagcata |
45402261 |
T |
|
| Q |
401 |
gagaagaaattaaaggcagtgcagaaagagacctc |
435 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
45402260 |
gagaagaaattaaaggcagtgcagaaagagacctc |
45402226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 10 - 105
Target Start/End: Complemental strand, 45402850 - 45402755
Alignment:
| Q |
10 |
gacatcatctctattctatttcaaatgctatgcttgtatcaaatttagcaagtctttagacatatacttgaaacatactgataggaacttgaaaca |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
45402850 |
gacatcatctctattctatttcaaatgctatgcttgtttcaaatttagcaagtctttagacatatacttgaaacatattgataggaacttgaaaca |
45402755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 165 - 262
Target Start/End: Complemental strand, 18812229 - 18812132
Alignment:
| Q |
165 |
tatttttcctcctctgccaagaaacaacttttcaacttgtgaattaaaagctctactaagtaccaatatacaatcagttatataagcatacacaacga |
262 |
Q |
| |
|
|||||||| ||| || |||||||| |||| |||| | || ||||||||| ||||||||| |||||||||||||| ||||||||||||||||| ||||| |
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|
| T |
18812229 |
tatttttcatccactaccaagaaaaaactattcatcatgggaattaaaacctctactaaataccaatatacaataagttatataagcatacataacga |
18812132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 277 - 434
Target Start/End: Original strand, 8835612 - 8835772
Alignment:
| Q |
277 |
ataacaatgacattagaatagaacaaaagagaatttgaaa-agnnnnnnnnncacttttggattaacaaagtccaacataaaattgcagcctaaaagaat |
375 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||| ||||||||||||||||||| ||| |
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|
| T |
8835612 |
ataacattgacattagaatagaacaaaaggaaatttgaaagaaagagaaaaacacttttggattaacaaagtccattataaaattgcagcctaaaataat |
8835711 |
T |
|
| Q |
376 |
ttagagaatttaaaattgaaccatagagaagaaattaaagg--cagtgcagaaagagacct |
434 |
Q |
| |
|
|| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8835712 |
tttgagaatttaaaattgaagcatagagaagaaattaaaggtagagtgcagaaagagacct |
8835772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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