View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14523_low_11 (Length: 219)
Name: NF14523_low_11
Description: NF14523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14523_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 44720594 - 44720413
Alignment:
| Q |
17 |
cataggcataagcacatattttccctgccatatgcagtaagtaacttaatttcgtctacagttaacttttcaagataatatttcccgtcacattaaaaac |
116 |
Q |
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| T |
44720594 |
cataggcataagcacatattttccctgccatatgcagtaagtaacttaatttcgtctacagttaacttttcaagataatatttcccgtcacattaaaaac |
44720495 |
T |
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| Q |
117 |
tcaagtgctgccatactcgataaacctaggtttgttatatgacttacaaatttgtataggatgtaactccatgcttagaata |
198 |
Q |
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| T |
44720494 |
tcaagtgctgccatactcgataaacctaggtttgttatatgacttacaaatttgtataggatgtaactccatgcttagaata |
44720413 |
T |
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Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 27 - 141
Target Start/End: Complemental strand, 38672782 - 38672672
Alignment:
| Q |
27 |
agcacatattttccctgccatatgcagtaagtaacttaatttcgtctacagttaacttttcaagataatatttcccgtcacattaaaaactcaagtgctg |
126 |
Q |
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||||||| ||||||||| |||||||||||||| |||||||||||| |||| |||| |||||||| ||||| || |||||||||||| ||||| | |
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| T |
38672782 |
agcacatcttttccctgttatatgcagtaagtac----atttcgtctacaattaaattttgaagataatctttcctgtaacattaaaaacttaagtgtcg |
38672687 |
T |
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| Q |
127 |
ccatactcgataaac |
141 |
Q |
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| T |
38672686 |
tcatactcgataaac |
38672672 |
T |
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