View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14523_low_3 (Length: 404)
Name: NF14523_low_3
Description: NF14523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14523_low_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 18 - 390
Target Start/End: Complemental strand, 17591654 - 17591282
Alignment:
| Q |
18 |
agaagctgttaccatttgtttgtagaggaatttgagactgcagatcagatgtccgttgagttcatgtctgcgtgttgtaaaggtgttctcatatcccctc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17591654 |
agaagctgttaccatttgtttgtagaggaatttgagactgcagatcagatgtccgttgagttcatgtctgcgtgttgtaaaggtgttctcatatcccctc |
17591555 |
T |
|
| Q |
118 |
gtaataggtgttgcgtgttttgctttcgacacaacgagaatgttagccatatgttttttctatatgctccttgagtttgaagatttggaaaacggtttgc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17591554 |
gtaataggtgttgcgtgttttgctttcgacacaacgagaatgttagccatatgttttttctatatgctccttgagtttgaagatttggaaaacggtttgc |
17591455 |
T |
|
| Q |
218 |
aatagtctggtgcttctggatgactaggaagtttgacgtggagacgtatcattgcgcgcattaaccttcgtcacgcttgcaactgttttaattctgcatt |
317 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17591454 |
aatagtctggtgcttgtggatgactacgaagtttgacgtggagacgtatcattgcgcgcattaaccttcgtcacgcttgcaactgttttaattctgcatc |
17591355 |
T |
|
| Q |
318 |
gtccaaattattgcagctaacggataccgccctctggtgatgcctgaagatgttaaaattattctgtttgatg |
390 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17591354 |
gtccaaattattgcagctatcggataccgccctctggtgatgcctgaagatgttaaaattattctgtttgatg |
17591282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University