View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14523_low_4 (Length: 389)

Name: NF14523_low_4
Description: NF14523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14523_low_4
NF14523_low_4
[»] chr1 (4 HSPs)
chr1 (15-103)||(23786345-23786433)
chr1 (102-148)||(23786282-23786328)
chr1 (192-257)||(24621923-24621983)
chr1 (315-362)||(14292770-14292817)
[»] chr2 (1 HSPs)
chr2 (254-355)||(23876722-23876825)
[»] chr5 (1 HSPs)
chr5 (260-355)||(5527854-5527951)
[»] chr3 (2 HSPs)
chr3 (262-355)||(7325-7420)
chr3 (258-355)||(3797971-3798070)
[»] chr4 (2 HSPs)
chr4 (266-307)||(44722759-44722800)
chr4 (315-355)||(50115308-50115348)
[»] chr7 (1 HSPs)
chr7 (315-355)||(46152137-46152177)


Alignment Details
Target: chr1 (Bit Score: 81; Significance: 5e-38; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 15 - 103
Target Start/End: Complemental strand, 23786433 - 23786345
Alignment:
Q  15 ataatactgagaaggatgacgaaacaaaacgaggaatcttgttcttgttgttggtgggaataatagaagaaacagcagcagcaccagca 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  23786433 ataatactgagaaggatgacgaaacaaaacgaggaatcttgttcttgttgttggtgggaataatagaacaaacagcagcagcagcagca 23786345  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 148
Target Start/End: Complemental strand, 23786328 - 23786282
Alignment:
Q  102 caccaccaccaccatatgatcttcttaaaattgaaaacattgttgca 148  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  23786328 caccaccaccaccatataatcttcttaaaattgaaaacattgttgca 23786282  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 192 - 257
Target Start/End: Original strand, 24621923 - 24621983
Alignment:
Q  192 agggaaccagcgatcttatttatatctagggataagaaggttaaacaaatttactaacttatttat 257  Q
    ||||||||||||||||||||||||||||||     || ||||||||||||||||||||||||||||    
T  24621923 agggaaccagcgatcttatttatatctagg-----gagggttaaacaaatttactaacttatttat 24621983  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 315 - 362
Target Start/End: Complemental strand, 14292817 - 14292770
Alignment:
Q  315 cattggattagatatgtggtccagattaaacataaggaacaaaaacat 362  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  14292817 cattggattagatatgtggtccatattaaacataaggaacacaaacat 14292770  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 254 - 355
Target Start/End: Original strand, 23876722 - 23876825
Alignment:
Q  254 ttatggtgacggctaggatgaggtagctaataggtccctcactagtgagggagtnnnnnnn--cattggattagatatgtggtccagattaaacataagg 351  Q
    |||||||| ||||||||||||||||| | |||||||||||||| |||||| |||         ||||||||||||||||||||| |||||||||||||||    
T  23876722 ttatggtggcggctaggatgaggtagttgataggtccctcactggtgaggtagtaaaaaataccattggattagatatgtggtctagattaaacataagg 23876821  T
Q  352 aaca 355  Q
    ||||    
T  23876822 aaca 23876825  T

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Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 260 - 355
Target Start/End: Complemental strand, 5527951 - 5527854
Alignment:
Q  260 tgacggctaggatgaggtagctaataggtccctcactagtgagggagt--nnnnnnncattggattagatatgtggtccagattaaacataaggaaca 355  Q
    ||||||||||||||||||||||||||||||||||||   |||||||||         |||||||||| |||||||||| |||||||||||||||||||    
T  5527951 tgacggctaggatgaggtagctaataggtccctcaccgatgagggagtaaaaaatatcattggattaaatatgtggtctagattaaacataaggaaca 5527854  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 262 - 355
Target Start/End: Complemental strand, 7420 - 7325
Alignment:
Q  262 acggctaggatgaggtagctaataggtccctcactagtgagggagtnnnnnnn--cattggattagatatgtggtccagattaaacataaggaaca 355  Q
    |||||||||||||||||||||||||||| ||||||  ||| |||||         ||||||||||||||||||||| ||||||||||||| |||||    
T  7420 acggctaggatgaggtagctaataggtctctcactgatgatggagtaaaaaatatcattggattagatatgtggtctagattaaacataaagaaca 7325  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 258 - 355
Target Start/End: Complemental strand, 3798070 - 3797971
Alignment:
Q  258 ggtgacggctaggatgaggtagctaataggtccctcactagtgagggagtnnnnnnn--cattggattagatatgtggtccagattaaacataaggaaca 355  Q
    ||||||||||| ||||||||||||||||||| | ||||  |||||| |||         ||||||||||||||||||||| |||||||||||||||||||    
T  3798070 ggtgacggctatgatgaggtagctaataggtacttcaccggtgaggaagtaaaaaataccattggattagatatgtggtctagattaaacataaggaaca 3797971  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 307
Target Start/End: Original strand, 44722759 - 44722800
Alignment:
Q  266 ctaggatgaggtagctaataggtccctcactagtgagggagt 307  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  44722759 ctaggatgaggtagctaataggtccctcaccagtgagggagt 44722800  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 355
Target Start/End: Original strand, 50115308 - 50115348
Alignment:
Q  315 cattggattagatatgtggtccagattaaacataaggaaca 355  Q
    ||||| ||||||||||||||| |||||||||||||||||||    
T  50115308 cattgaattagatatgtggtctagattaaacataaggaaca 50115348  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 315 - 355
Target Start/End: Complemental strand, 46152177 - 46152137
Alignment:
Q  315 cattggattagatatgtggtccagattaaacataaggaaca 355  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  46152177 cattggattagatatgtggtctagattaaacataaggaaca 46152137  T

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