View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14523_low_7 (Length: 330)
Name: NF14523_low_7
Description: NF14523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14523_low_7 |
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| [»] scaffold0102 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 12 - 314
Target Start/End: Complemental strand, 20599980 - 20599678
Alignment:
| Q |
12 |
tcatcacatttgcagagcctttagcttcaatgtttcttttctccaaaaatgcaatcaaattctgatactgatctttggtcagcatcattccattttcatt |
111 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
20599980 |
tcatcacatttgcagagcctttagcttcaatgttgcttttctccaacaatgcaatcaaattctgatactgatctttggttagcattattccattttcatc |
20599881 |
T |
|
| Q |
112 |
atttttcctagtggaagcatttcccttgagctcagtttcttcactttccacaaaattagcattagcaaaagaatttcctcctcctcttccccaattagga |
211 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20599880 |
atttttcccagtggaagcatttcccttgagctcagtttcttcactttccacaaaattagcattagcaaaagaatttcctcctcctcttccccaattagga |
20599781 |
T |
|
| Q |
212 |
gggtaaccatgtttcttataacaagtttccacaatgtgattagttctattacagaaactacacactctgagagtccctcttcctcttccttgaaaaccat |
311 |
Q |
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|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
20599780 |
gggtaaccatgtttcttataacaagttttcacagtgtgattagttctattacagaaactacacactctgagattccctcttcctcttccttgaaaaccat |
20599681 |
T |
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| Q |
312 |
ttc |
314 |
Q |
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||| |
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| T |
20599680 |
ttc |
20599678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 4695605 - 4695667
Alignment:
| Q |
180 |
aagaatttcctcctcctcttccccaattaggagggtaaccatgtttcttataacaagtttcca |
242 |
Q |
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| T |
4695605 |
aagaatttcctcctcctctaccccaattaggaggaaagccatgcttcttataacaagtctcca |
4695667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 183; Significance: 6e-99; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 12 - 306
Target Start/End: Original strand, 5154052 - 5154345
Alignment:
| Q |
12 |
tcatcacatttgcagagcctttagcttcaatgtttcttttctccaaaaatgcaatcaaattctgatactgatctttggtcagcatcattccattttcatt |
111 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||| |||||||| ||||||||| ||||||||| |
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| T |
5154052 |
tcatcacatttgcagagcctttagcttcaatgttgcttttctccaacagtgcaatcaaattctgatactggtctttggttagcatcatttcattttcatc |
5154151 |
T |
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| Q |
112 |
atttttcctagtggaagcatttcccttgagctcagtttcttcactttccacaaaattagcattagcaaaagaatttcctcctcctcttccccaattagga |
211 |
Q |
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|||||||| | |||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5154152 |
atttttcccaatggaagtgcttcccttgagctcagtatcttcacattccacaaaattagcattagcaaaagaatttcctcctcctcttccccaattagga |
5154251 |
T |
|
| Q |
212 |
gggtaaccatgtttcttataacaagtttccacaatgtgattagttctattacagaaactacacactctgagagtccctcttcctcttccttgaaa |
306 |
Q |
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| T |
5154252 |
ggataaccatgtttcttataac-aggttccaaaatgtgattggttctattgcagaagctacataccctgagatttgctcttcctattccttgaaa |
5154345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 172 - 258
Target Start/End: Complemental strand, 22842012 - 22841926
Alignment:
| Q |
172 |
attagcaaaagaatttcctcctcctcttccccaattaggagggtaaccatgtttcttataacaagtttccacaatgtgattagttct |
258 |
Q |
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| T |
22842012 |
attagcataggaatttcctccacctcttccccagtttggagggtatccatgcttcttgtaacaagtttccactgtgtgattagttct |
22841926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 20 - 306
Target Start/End: Original strand, 31233391 - 31233677
Alignment:
| Q |
20 |
tttgcagagcctttagcttcaatgtttcttttctccaaaaatgcaatcaaattctgatactgatctttggtcagcatcattccattttcattatttttcc |
119 |
Q |
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||||| || ||||||||||||| || ||| | ||||| |||||||||||||| ||||||||||| || || |||||||||||| ||||| |||||||| |
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| T |
31233391 |
tttgctgaacctttagcttcaacattgcttctttccaataatgcaatcaaattttgatactgatccttagttagcatcattccaccttcatcatttttcc |
31233490 |
T |
|
| Q |
120 |
tagtggaagcatttcccttgagctcagtttcttcactttccacaaaattagcattagcaaaagaatttcctcctcctcttccccaattaggagggtaacc |
219 |
Q |
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|| |||| |||| || ||| ||||||| |||||||| |||||||| |||||||||||||| |||||||| |||||||||||| | ||||| |
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| T |
31233491 |
cagcagaagtgcttcctttagattcaacatcttcacaatccacaaagttagcatttgcaaaagaatttccacctcctctgccccaattaggaagctaacc |
31233590 |
T |
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| Q |
220 |
atgtttcttataacaagtttccacaatgtgattagttctattacagaaactacacactctgagagtccctcttcctcttccttgaaa |
306 |
Q |
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||||||||| ||||| ||||| || |||||||||||||||||||||||||||||||| || || | |||| ||||||||||||||| |
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| T |
31233591 |
atgtttcttgtaacatgtttcaactgtgtgattagttctattacagaaactacacactatgggatttcctcctcctcttccttgaaa |
31233677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 172 - 258
Target Start/End: Complemental strand, 14233518 - 14233432
Alignment:
| Q |
172 |
attagcaaaagaatttcctcctcctcttccccaattaggagggtaaccatgtttcttataacaagtttccacaatgtgattagttct |
258 |
Q |
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| T |
14233518 |
attagcataggaatttcctccacctcttccccagtttggagggtatccatgcttcttgtaacaagtatccactgtgtgattagttct |
14233432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 268
Target Start/End: Complemental strand, 37175416 - 37175328
Alignment:
| Q |
180 |
aagaatttcctcctcctcttccccaattaggagggtaaccatgtttcttataacaagtttccacaatgtgattagttctattacagaaa |
268 |
Q |
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|||||||||| ||||||||||||||||| || || |||||||| || |||||||||||||| ||| | ||||| ||||| | ||||||| |
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| T |
37175416 |
aagaatttccacctcctcttccccaatttggtggataaccatgctttttataacaagtttcaacagtatgatttgttctttcacagaaa |
37175328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0102 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0102
Description:
Target: scaffold0102; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 242
Target Start/End: Complemental strand, 3298 - 3236
Alignment:
| Q |
180 |
aagaatttcctcctcctcttccccaattaggagggtaaccatgtttcttataacaagtttcca |
242 |
Q |
| |
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||||||| ||||||||||| |||||||||||||| | ||||| |||||||||||||| |||| |
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| T |
3298 |
aagaattacctcctcctctaccccaattaggaggaaagccatgcttcttataacaagtctcca |
3236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 23418729 - 23418791
Alignment:
| Q |
180 |
aagaatttcctcctcctcttccccaattaggagggtaaccatgtttcttataacaagtttcca |
242 |
Q |
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||||||| ||||||||||| |||||||||||||| | ||||| |||||||||||||| |||| |
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| T |
23418729 |
aagaattacctcctcctctaccccaattaggaggaaagccatgcttcttataacaagtctcca |
23418791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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