View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14523_low_8 (Length: 297)
Name: NF14523_low_8
Description: NF14523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14523_low_8 |
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| [»] scaffold0536 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 8e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 62 - 280
Target Start/End: Original strand, 48911227 - 48911446
Alignment:
| Q |
62 |
gggcaaccagagttaggatc-tctccattgttggacattaaaagcaatagcagaaacaattaattagtacaatacctctctcatcatcacgttcattcta |
160 |
Q |
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| T |
48911227 |
gggcaaccagagttaggatcctctccattgttggacattaaaagcaatagcagaaacagttaattgctacaatacctctctcatcatcacgttcattcta |
48911326 |
T |
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| Q |
161 |
attcatatatagtatccaaacacacagaagacaaggcaaagatgatgaatacggaagaaggagaagagaaaccacttaatatatacttcataccttactt |
260 |
Q |
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| T |
48911327 |
attcattcatagtatccaaacacacagaagacaaggcaaagatgatgaatacggaagaaggagaagagaaagcacttaccatctacttcataccttactt |
48911426 |
T |
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| Q |
261 |
agcacctggccacatgatcc |
280 |
Q |
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| T |
48911427 |
agcacctggccacatgatcc |
48911446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 5536 - 5612
Alignment:
| Q |
204 |
gatgaatacggaagaaggagaagagaaaccacttaatatatacttcataccttacttagcacctggccacatgatcc |
280 |
Q |
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| T |
5536 |
gatggatatggaagaaggagaagagaaagcacttactatctacttcataccttacttagctcctggtcatatgatcc |
5612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 280
Target Start/End: Original strand, 9553 - 9612
Alignment:
| Q |
221 |
gagaagagaaaccacttaatatatacttcataccttacttagcacctggccacatgatcc |
280 |
Q |
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| T |
9553 |
gagaagagaaagcacttaaaatctacttcataccttacttatcacctggtcatatgatcc |
9612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 150
Target Start/End: Complemental strand, 31742786 - 31742730
Alignment:
| Q |
94 |
gacattaaaagcaatagcagaaacaattaattagtacaatacctctctcatcatcac |
150 |
Q |
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| T |
31742786 |
gacactaaaagcaatagcggaaataattaattgctacaataactctctcatcatcac |
31742730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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