View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14524_high_1 (Length: 463)
Name: NF14524_high_1
Description: NF14524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14524_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 382
Target Start/End: Original strand, 40562573 - 40562919
Alignment:
| Q |
18 |
atgaacggtggatttaacatttgtgacgtatgaagttgtagtaaccatattggnnnnnnnntgaggtgaaggtgtttgaagaagagaaaggagggagaag |
117 |
Q |
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| T |
40562573 |
atgaacggtggatttaacatttgtgacgtatgaagttgtagtaaccatattggaaaaaaaatgaggtgaaggt---tgaagaagagaaaggagggagaag |
40562669 |
T |
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| Q |
118 |
aatgaaataagtctcaagttgagttattttgatattgatgggatccttgattattattatatctatctatctatataggttcgttctatggtgttgatat |
217 |
Q |
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| T |
40562670 |
aatgaaataagtctcaagttgagttattttgatattgatgggatccttga---ttattat-------------tata-------tctatggtgttgatat |
40562746 |
T |
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| Q |
218 |
tcaactaat--------gtctcttttgcttgacattttttaatgtgtttatttagatattttcttataaaggaaatcaaataaaaatgagactaaattat |
309 |
Q |
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| T |
40562747 |
tcaactaatagaaatttgtctgttttgcttgacattttttaatgtgtttatttagatattttcttataaaggaaatcaaataaaaattagactaaattat |
40562846 |
T |
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| Q |
310 |
agatgagagagaacgggaaagcgattggtggacatgtctataataatagagtgctgtatgaaataagttacaa |
382 |
Q |
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| T |
40562847 |
agatgagagagaacgggaaagcgattggtggacatgtctataataatagagtgctgtatgaaataaattacaa |
40562919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 377 - 446
Target Start/End: Original strand, 40562953 - 40563022
Alignment:
| Q |
377 |
ttacaatttttatggttgtgttcattcttccgtcaaaatgttcgttccatgatgttgatgttcaactaag |
446 |
Q |
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| T |
40562953 |
ttacaatttttatggttgtgttcattcttccgtcaaaatgttcgttccatgatgttgatgttcaactaag |
40563022 |
T |
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