View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14524_high_2 (Length: 426)
Name: NF14524_high_2
Description: NF14524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14524_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 24 - 412
Target Start/End: Original strand, 39470159 - 39470547
Alignment:
| Q |
24 |
gaacctgtgaactcattacttgatgcatttaatgttgtaagtcctgacgcctttccaagtcctaatggaaattcaccaatgaagaaattctgacttacat |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39470159 |
gaacctgtgaactcattacttgatgcatttaatgttgtaagtcccgacgcctttccaagtcctaatggaaattcaccaatgaagaaattctgacttacat |
39470258 |
T |
|
| Q |
124 |
caagacttttcaatgtggtgagattggatataaattttggaaatggtgatgaaaatgcattgcaacataagttaagagaagtaagattttgaagtctttg |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39470259 |
caagacttttcaatgtggtgagattggatataaattttggaaatggtgatgaaaatgcattgcaacataagttaagagaagtaagattttgaagtctttg |
39470358 |
T |
|
| Q |
224 |
tatatcaccggatactataccactgagattcttctgagagagaccaaggttctccacagttccagccgagttgcattcgattccggtccagttacaatga |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39470359 |
tatatcaccggatactataccactgagattcttgtgagagagatcaaggttctccacagttccagccgagttgcattcgattccggtccagttacaatga |
39470458 |
T |
|
| Q |
324 |
gcagcatccaatttccaatcctgaagggtgttcaaaggatcaacaagaccttctttcaaagaaagcaaagctgatacttcatcatttga |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39470459 |
gcagcatccaatttccaatcctgaagggtgttcaaaggatcaacaagaccttctttcaaagaaagcaaagctgatacttcatcatttga |
39470547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 165 - 325
Target Start/End: Original strand, 44262275 - 44262435
Alignment:
| Q |
165 |
aatggtgatgaaaatgcattgcaacataagttaagagaagtaagattttgaagtctttgtatatcaccggatactataccactgagattcttctgagaga |
264 |
Q |
| |
|
|||||||||||||| | |||||||| ||| ||||||| || ||| ||| |||| ||| ||||||| ||||| | ||||||||||||||| ||||||| |
|
|
| T |
44262275 |
aatggtgatgaaaaagtgttgcaacagaagctaagagaggttagactttaaagtgtttctatatcattggatattgaaccactgagattcttgtgagaga |
44262374 |
T |
|
| Q |
265 |
gaccaaggttctccacagttccagccgagttgcattcgattccggtccagttacaatgagc |
325 |
Q |
| |
|
|| |||| |||| ||| ||||| | |||||||||| ||| | ||||||||||||||||| |
|
|
| T |
44262375 |
gatcaagcttctttacatttccatctgagttgcatttgatgctagtccagttacaatgagc |
44262435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 351 - 413
Target Start/End: Original strand, 44262480 - 44262544
Alignment:
| Q |
351 |
gtgttcaaaggatcaacaagaccttctttc--aaagaaagcaaagctgatacttcatcatttgat |
413 |
Q |
| |
|
||||| |||||||||||||||||| |||| | ||||||||| ||||||||||||||||||||| |
|
|
| T |
44262480 |
gtgttgaaaggatcaacaagacctgcttttttatagaaagcaatgctgatacttcatcatttgat |
44262544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University