View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14524_high_5 (Length: 339)
Name: NF14524_high_5
Description: NF14524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14524_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 26665573 - 26665893
Alignment:
| Q |
1 |
taggatggaaaaagtaacagccttatttaaagccctacacaacggccttatttaaaaccctacacattgttccaagtttcaagcccaaaaactcttggcc |
100 |
Q |
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| T |
26665573 |
taggatgggaaaaataacgaccttatttaaagccctacacaacggccttatttaaaatcctacacattgttccaagtttcaagcccaaaaactcttggcc |
26665672 |
T |
|
| Q |
101 |
atgtgctaaatttgagtctacattaagcaaaggattgtgactactaaaatatttatctttacaatataaatattttaattactagcatctttttattgta |
200 |
Q |
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| T |
26665673 |
atgtgctaaatttgagtctacattaagcaaaggattgtgactactaaaatatttatctttacaatataaatattttaattactagcatctttttattgta |
26665772 |
T |
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| Q |
201 |
cttggttgtgcaataaacatgactcaatattggtatgttttgtaatttgtttgcaggagcttccaattcatcaaagatcagaagcagtgaacagtttagt |
300 |
Q |
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| T |
26665773 |
cttggttgtgcaataaacatgactcaatattggtatgttttgtaatttgtttgcaggagcttccaattcatcaaagatcagaagcagtgaacagtttagt |
26665872 |
T |
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| Q |
301 |
ttttgaagcaaatgcaagagt |
321 |
Q |
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| T |
26665873 |
ttttgaagcaaatgcaagagt |
26665893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 321
Target Start/End: Original strand, 35919644 - 35919711
Alignment:
| Q |
254 |
caggagcttccaattcatcaaagatcagaagcagtgaacagtttagtttttgaagcaaatgcaagagt |
321 |
Q |
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| T |
35919644 |
caggagcttccagttcaccaaagagcagatgcagtaaacagtttagtctatgaagcaaatgcaagagt |
35919711 |
T |
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