View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14524_high_8 (Length: 309)
Name: NF14524_high_8
Description: NF14524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14524_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 295
Target Start/End: Complemental strand, 14205869 - 14205592
Alignment:
| Q |
18 |
acaatgcctaggagtgatgtttcattgatcaacgagtcccataataggttgatatttgatgaaatgaactataattgtagattacatctcatgccatata |
117 |
Q |
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| T |
14205869 |
acaatgcctaggagtgatgtttcattgatcaacgagtcccataataggttgatatttgatgaaatgaactataattgtagattacatctcatgctatata |
14205770 |
T |
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| Q |
118 |
ggtacttacatgtgggaagaaaatatccatgctgccacacgttatgtgcaagtgattgttgcttataaagaatgttactgctgattagctaagaatgtta |
217 |
Q |
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| T |
14205769 |
ggtacttacatgtgggaagaaaatatccatgctaccacacgttatgtgcaagtgattgttgcttataaagaatgttactgctgattagctaagaatgtta |
14205670 |
T |
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| Q |
218 |
ttaattgcaggtgaaacatcaattgcagaatggtagtgacaacaggttatggtacattaagaaataagaaacgcgtta |
295 |
Q |
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| T |
14205669 |
ttaattgcaggtgaaacatcaattgcagaatggtagtgacaacaggttatggtacattaagaaataagaaacgcgtta |
14205592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 295
Target Start/End: Complemental strand, 31406084 - 31405807
Alignment:
| Q |
18 |
acaatgcctaggagtgatgtttcattgatcaacgagtcccataataggttgatatttgatgaaatgaactataattgtagattacatctcatgccatata |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31406084 |
acaatgcctaggagtgatgtttcattgatcaacgagtcccataataggttgttatttgatgaaatgaactataattgtagattacatctcatgctatata |
31405985 |
T |
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| Q |
118 |
ggtacttacatgtgggaagaaaatatccatgctgccacacgttatgtgcaagtgattgttgcttataaagaatgttactgctgattagctaagaatgtta |
217 |
Q |
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| T |
31405984 |
ggtacttacatgtgggaagaaaatatccatgcttccacacgttatgtgcaagtgattgttgcttataaagaatgttactgctgattagctaagaatgttt |
31405885 |
T |
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| Q |
218 |
ttaattgcaggtgaaacatcaattgcagaatggtagtgacaacaggttatggtacattaagaaataagaaacgcgtta |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31405884 |
ttaattgcaggtgaaacatcaattgcagaatggtagtgacaacaggttatggtacattaagaaataagaaacgcgtta |
31405807 |
T |
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