View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14524_low_11 (Length: 309)
Name: NF14524_low_11
Description: NF14524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14524_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 11 - 291
Target Start/End: Complemental strand, 4371061 - 4370781
Alignment:
| Q |
11 |
cacagaatatggagatttcttccttgattggtactcaagcaaacttgttgaacatggtgagaaaattcttgtatcagctaaaagcatattccaaacaagt |
110 |
Q |
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| T |
4371061 |
cacagaatatggagatttcttccttgattggtactcaagcaagcttgttgaacatggtgagaaaattcttgtatcagctaaaagcatattccaaacaagt |
4370962 |
T |
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| Q |
111 |
ggagtgaaactatctgccaaaatagctggaattcattggcattacaatgcaagatcacatgcaactgaattaactgcaggttactataacacaaggtttc |
210 |
Q |
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| T |
4370961 |
ggagtgaaactatctgccaaaatagctggaattcattggcattacaatgcaagatcacatgcaactgaattaactgcaggttactataacacaaggtttc |
4370862 |
T |
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| Q |
211 |
atgatggttatataccaatagcacaaatgcttgcaaaacatggagttatactaaatttcacatgcatggaaatgaaggata |
291 |
Q |
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| T |
4370861 |
atgatggttatataccaatagcacaaatgctagcaaaacatggagttatattgaatttcacatgcatggaaatgaaggata |
4370781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 11 - 291
Target Start/End: Complemental strand, 4363258 - 4362978
Alignment:
| Q |
11 |
cacagaatatggagatttcttccttgattggtactcaagcaaacttgttgaacatggtgagaaaattcttgtatcagctaaaagcatattccaaacaagt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4363258 |
cacagaatatggagatttcttccttgattggtactcaagcaagcttgttgaacatggtgagaaaattcttgtatcagctaaaagcatattccaaacaagt |
4363159 |
T |
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| Q |
111 |
ggagtgaaactatctgccaaaatagctggaattcattggcattacaatgcaagatcacatgcaactgaattaactgcaggttactataacacaaggtttc |
210 |
Q |
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| T |
4363158 |
ggagtgaaactatctgccaaaatagctggaattcattggcattacaatgcaagatcacatgcaactgaattaactgcaggttactataacacaaagtttc |
4363059 |
T |
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| Q |
211 |
atgatggttatataccaatagcacaaatgcttgcaaaacatggagttatactaaatttcacatgcatggaaatgaaggata |
291 |
Q |
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| T |
4363058 |
atgatggttatataccaatagcacaaatgctagcaaaacatggagttatattgaatttcacatgcatggaaatgaaggata |
4362978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 78 - 286
Target Start/End: Original strand, 41043862 - 41044070
Alignment:
| Q |
78 |
cttgtatcagctaaaagcatattccaaacaagtggagtgaaactatctgccaaaatagctggaattcattggcattacaatgcaagatcacatgcaactg |
177 |
Q |
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||||||||||| ||| |||||||| ||| ||| ||||||||||||| ||| | || ||||| ||||||||||||| |||| || || ||| ||| |
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| T |
41043862 |
cttgtatcagccaaagaaatattccagacatctggtgtgaaactatctggtaaagttgcgggaatccattggcattacagatcaaggtcgcacgcagctg |
41043961 |
T |
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| Q |
178 |
aattaactgcaggttactataacacaaggtttcatgatggttatataccaatagcacaaatgcttgcaaaacatggagttatactaaatttcacatgcat |
277 |
Q |
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| T |
41043962 |
aactaactgctggttactataacactagacataatgatgggtatcttccaattgccaaaatgtttgcaaaccatgacgttgtcttcaatttcacctgcat |
41044061 |
T |
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| Q |
278 |
ggaaatgaa |
286 |
Q |
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| T |
41044062 |
ggaaatgaa |
41044070 |
T |
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