View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14524_low_13 (Length: 250)
Name: NF14524_low_13
Description: NF14524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14524_low_13 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 39029626 - 39029377
Alignment:
| Q |
7 |
atatttactaacatttgcacgtaaaagactattttaactaatataatacacaattaaggactctcgaaattttgatacataaaactattgtgcttattta |
106 |
Q |
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| T |
39029626 |
atatttactaacatttgcacgtaaaagactatttttactaacataatacataattaaggactctcgaaattttgatacataaaactattgtgcttattta |
39029527 |
T |
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| Q |
107 |
ttgcacattcaaag-----aatgactattacacgagctcaaatgtttgtgtctatccaagagnnnnnnnagtatattaactactttatgatggggcacat |
201 |
Q |
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| T |
39029526 |
ttgcacattcaaagaccaaaatgactattacacgagctcaaatgtttgtgtctatccaagagtttttttagtatattaactactttatgatagggcacat |
39029427 |
T |
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| Q |
202 |
gatcacataaataggcgtgcatgcaaac-aaaacacattcactaaattca |
250 |
Q |
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| T |
39029426 |
gatcacataaataggcgtgcatgcaaacaaaaacacattcactaaattca |
39029377 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 53
Target Start/End: Complemental strand, 794460 - 794432
Alignment:
| Q |
25 |
acgtaaaagactattttaactaatataat |
53 |
Q |
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| T |
794460 |
acgtaaaagactattttaactaatataat |
794432 |
T |
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