View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14524_low_17 (Length: 215)
Name: NF14524_low_17
Description: NF14524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14524_low_17 |
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| [»] scaffold0178 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 40155586 - 40155529
Alignment:
| Q |
144 |
cgaaaataacatacaatacaacctatgataaaaattactctagtttcaatagaataat |
201 |
Q |
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| T |
40155586 |
cgaaaataacatacaatacaacctatgataaaaattactctagtttcaatagaataat |
40155529 |
T |
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Target: scaffold0178 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: scaffold0178
Description:
Target: scaffold0178; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 54 - 126
Target Start/End: Complemental strand, 18586 - 18514
Alignment:
| Q |
54 |
ctaagtttttaatctcagccctttgtttaatttatttcacatgtcacacatccacgatgataaatggtgtaaa |
126 |
Q |
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| T |
18586 |
ctaaggttttaatctcagccctttgtttaatttattccacatgtcacacatccatgatggtaaatggtgtaaa |
18514 |
T |
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Target: scaffold0178; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 19133 - 19228
Alignment:
| Q |
18 |
gtttcagatacaagagagtaataagattgnnnnnnn-ctaagtttttaatctcagccctttgtttaatttatttcacatgtcacacatccacgatg |
112 |
Q |
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| T |
19133 |
gttttagatacaagagagtaataagattgttttttttctaagtttttaatctcagccctttgtttaatttattacacatgtcacacatccatgatg |
19228 |
T |
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Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 41282774 - 41282659
Alignment:
| Q |
18 |
gtttcagatacaagagagtaataagattgnnnnnnnctaagtttttaatctcagccctttgtttaatttatttcacatgtcacacatccacgatgataaa |
117 |
Q |
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| T |
41282774 |
gtttcagatacaagaaagtaataagattgtttttttctatgtttttaatctcaatcctttgttcaatttattccacatatcacacatctatgatggtaaa |
41282675 |
T |
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| Q |
118 |
tggtgtaaaaggagca |
133 |
Q |
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| T |
41282674 |
tggtgtaaatggagca |
41282659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 41282884 - 41282991
Alignment:
| Q |
18 |
gtttcagatacaagagagtaataagattgnnnnnnnctaagtttttaatctcagccctttgtttaatttatttcacatgtcacacatccacgatgataaa |
117 |
Q |
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| T |
41282884 |
gtttcagatacaagagagtaacaagtttgtttttt-ctaaggttttaatctcaaccctttgtttaatttattccacatgtcacacatccatgatggtaaa |
41282982 |
T |
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| Q |
118 |
tggtgtaaa |
126 |
Q |
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| T |
41282983 |
tgatgtaaa |
41282991 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 133
Target Start/End: Original strand, 48204973 - 48205015
Alignment:
| Q |
91 |
cacatgtcacacatccacgatgataaatggtgtaaaaggagca |
133 |
Q |
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| T |
48204973 |
cacatgtcacacatccatgatggtaaatggtgtaaatggagca |
48205015 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 133
Target Start/End: Complemental strand, 31600516 - 31600474
Alignment:
| Q |
91 |
cacatgtcacacatccacgatgataaatggtgtaaaaggagca |
133 |
Q |
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| T |
31600516 |
cacatgtcacacatccatgatgataaatggggtaaatggagca |
31600474 |
T |
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