View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14524_low_5 (Length: 419)
Name: NF14524_low_5
Description: NF14524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14524_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Complemental strand, 49126139 - 49125739
Alignment:
| Q |
1 |
gcagcaataacaaaatttatgatattgcgagggacttaaatcatggaataatgttggatgtcacgaaaattgtttcacaactcggccatgaaggcattca |
100 |
Q |
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| T |
49126139 |
gcagcaataacaaaatttatgatattgcgagggacttaaatcatggaataatgttggatgtcacgaaaattgtttcacaactcggccatgaaggcattca |
49126040 |
T |
|
| Q |
101 |
aggaaacatgtaactatattattcactataccctccaagttttccgacaaagacacttgttagttggttaatttattagctggagtctttcatgattaaa |
200 |
Q |
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| T |
49126039 |
aggaaacatgtaactatattattcactataccctccaagttttccgacaaagacacttgttagttggttaatttattagctggagtctttcatgattaaa |
49125940 |
T |
|
| Q |
201 |
tcagtcataataaataacatccatgtaaattatatttaaaccaaatcattgccttgttttctacaagtaacagaaaatgtaataaatgtggcaacaagta |
300 |
Q |
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| T |
49125939 |
tcagtcataataaataacatccatgtaaattatatttaaaccaaatcattgccttgttttctacgggtaacagaaaatgtaataaatgtggcaacaagta |
49125840 |
T |
|
| Q |
301 |
cacatttcaaaggaagcagatgatgtgaacttacacaattgaaaatatggggagctccaggtcctgcatattgaattgaaattgaaataaagaacatgtc |
400 |
Q |
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| T |
49125839 |
caaatttcaaaggaagcagatgatgtgaacttacacaattgaaaatatggggagctccaggtcctgcatattgaattgaaattgaaataaagaacatgtc |
49125740 |
T |
|
| Q |
401 |
c |
401 |
Q |
| |
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| T |
49125739 |
c |
49125739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 178
Target Start/End: Complemental strand, 37664463 - 37664387
Alignment:
| Q |
102 |
ggaaacatgtaactatattattcactataccctccaagttttccgacaaagacacttgttagttggttaatttatta |
178 |
Q |
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||||||||||||| ||||||||||||| || ||| | |||| |||||||| | |||||| |||||||||| |||| |
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| T |
37664463 |
ggaaacatgtaaccatattattcactacacgctctgtgatttctgacaaagatatttgttaattggttaattcatta |
37664387 |
T |
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