View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14524_low_6 (Length: 385)
Name: NF14524_low_6
Description: NF14524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14524_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 4841183 - 4841062
Alignment:
| Q |
25 |
ttagtaggcataagtaaatcccacaccaatttaccaagtaatgcaaagtctgtctttccaagatgctagcttattaataagaaaactgcatacaagttaa |
124 |
Q |
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| T |
4841183 |
ttagtaggcataagtaaatcccacaccaatttaccaagtaatgcaaagtctgtctttccaagatgctagcttattaatgacaaaactgcatacaagtgaa |
4841084 |
T |
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| Q |
125 |
attaacttttaatattaaaatg |
146 |
Q |
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|||||||||||||||||||||| |
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| T |
4841083 |
attaacttttaatattaaaatg |
4841062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 79 - 275
Target Start/End: Complemental strand, 4839044 - 4838843
Alignment:
| Q |
79 |
tttccaagatgctagcttattaataagaaaactgcatacaagttaaattaacttt----taatattaaaatggttagtttttttcttaacnnnnnnnnnn |
174 |
Q |
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| T |
4839044 |
tttccaagatgctagcttattaatgagaaaaccgcatacaagtgaaattaacttaaaaataatattaaaatggttagtttttt-ctcaacaaaaaaaaaa |
4838946 |
T |
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| Q |
175 |
nn-gtaataaaagttagtttagacttcttcaaaatct-aaagctttctatatttagaaaataaatacacaatattaaaatgtcttcatcactctaaaaaa |
272 |
Q |
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||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
4838945 |
aacgtaataacagttagtttagacttctttaaaatctcaaagctttctatatttagaaaataactacacaatattaaaatgtcttcatcactttaaaaaa |
4838846 |
T |
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| Q |
273 |
tga |
275 |
Q |
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||| |
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| T |
4838845 |
tga |
4838843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 4839349 - 4839295
Alignment:
| Q |
16 |
cataggtggttagtaggcataagtaaatcccacaccaatttaccaagtaatgcaa |
70 |
Q |
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| T |
4839349 |
cataggtggttagtaggcataagtaaattccacaccaatttaccaagtaatgcaa |
4839295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 184 - 272
Target Start/End: Complemental strand, 4832442 - 4832352
Alignment:
| Q |
184 |
aagttagtttagacttcttcaaaatct-aaagctttctatattt-agaaaataaatacacaatattaaaatgtcttcatcactctaaaaaa |
272 |
Q |
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|||||||||||||||| |||||||||| |||||||||||||||| ||| ||||| |||||||||||| ||| |||||||| || ||||||| |
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| T |
4832442 |
aagttagtttagacttattcaaaatctcaaagctttctatatttaagagaataactacacaatattagaatatcttcatcgctttaaaaaa |
4832352 |
T |
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