View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14524_low_8 (Length: 317)
Name: NF14524_low_8
Description: NF14524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14524_low_8 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 37 - 317
Target Start/End: Complemental strand, 4371318 - 4371038
Alignment:
| Q |
37 |
atcagttttgaacaatttttcaaaatagtccaaaatcatattaatgttagacatgttacatacaaaatatctctcacaaaatatctagctactaaccaaa |
136 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4371318 |
atcatttttgaacaatttttcaaaatagtccaaaatcatattaacgttagacatgttacatacaaaatatctctcacaaaatatctagctactaaccaaa |
4371219 |
T |
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| Q |
137 |
atgactcatttttcaaacagtatatgagatcttctttggaagcatcagctgcggcaattgggaagaaagagtggggaacaagtggaccccatgactcagg |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4371218 |
atgactcatttttcaaacagtatatgagatcttctttggaagcatcagctgcggcaattgggaagaaagagtggggaacaggtggaccccatgactcagg |
4371119 |
T |
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| Q |
237 |
tcaatacaatcaataccctgaagatactggatttttcaaaagggaaggaacatggaacacagaatatggagatttcttcct |
317 |
Q |
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| T |
4371118 |
acaatacaatcaatttcctgaggatactggatttttcaaaagagaaggaacatggaacacagaatatggagatttcttcct |
4371038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 150 - 317
Target Start/End: Complemental strand, 4363402 - 4363235
Alignment:
| Q |
150 |
caaacagtatatgagatcttctttggaagcatcagctgcggcaattgggaagaaagagtggggaacaagtggaccccatgactcaggtcaatacaatcaa |
249 |
Q |
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|||||||||||||||||| || ||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
4363402 |
caaacagtatatgagatcatccttggaagcaacagcaggagcaattgggaagaaagagtggggaacaagtggaccccatgactcaggacaatacaatcaa |
4363303 |
T |
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| Q |
250 |
taccctgaagatactggatttttcaaaagggaaggaacatggaacacagaatatggagatttcttcct |
317 |
Q |
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| T |
4363302 |
tttcctgaggatactggatttttcaaaagagaaggaacatggaacacagaatatggagatttcttcct |
4363235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 112 - 225
Target Start/End: Original strand, 931355 - 931469
Alignment:
| Q |
112 |
acaaaatatctagctactaa----ccaaaatgactcatttttcaaacagtatatgagatcttctttggaagcatcagctgcggcaattgggaagaaagag |
207 |
Q |
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|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
931355 |
acaaaatatctagctactaattaaccaaaataactcatttttcaaacagtatatgagatctt---tggaagcatcagctgcggcaattggaaagaaagag |
931451 |
T |
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| Q |
208 |
tggggaacaagtggaccc |
225 |
Q |
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| T |
931452 |
tggggaacaagtggaccc |
931469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 112 - 222
Target Start/End: Complemental strand, 10607936 - 10607825
Alignment:
| Q |
112 |
acaaaatatctagctac----taaccaaaatgactcatttttcaaacagtatatgagatcttctttggaagcatcagctgcggcaattgggaagaaagag |
207 |
Q |
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|||||| |||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
10607936 |
acaaaacatctagctactaattaaccaaaataactcatttttcaaacagtatatgaga---tctttggaagcatcagctgcggcaattgggaagaaagag |
10607840 |
T |
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| Q |
208 |
tggggaacaagtgga |
222 |
Q |
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||||||||||||||| |
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| T |
10607839 |
tggggaacaagtgga |
10607825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 6e-37; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 112 - 225
Target Start/End: Complemental strand, 12589820 - 12589706
Alignment:
| Q |
112 |
acaaaatatctagctactaa----ccaaaatgactcatttttcaaacagtatatgagatcttctttggaagcatcagctgcggcaattgggaagaaagag |
207 |
Q |
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|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
12589820 |
acaaaatatctagctactaattaaccaaaataactcatttttcaaacagtatatgagatctt---tggaagcatcagttgcggcaattgggaagaaagag |
12589724 |
T |
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| Q |
208 |
tggggaacaagtggaccc |
225 |
Q |
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| T |
12589723 |
tggggaacaagtggaccc |
12589706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 112 - 225
Target Start/End: Original strand, 46764683 - 46764797
Alignment:
| Q |
112 |
acaaaatatctagctactaa----ccaaaatgactcatttttcaaacagtatatgagatcttctttggaagcatcagctgcggcaattgggaagaaagag |
207 |
Q |
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|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
46764683 |
acaaaatatctagctactaattaaccaaaataactcatttttcaaacagtatatgagatctt---tggaagcatcagttgcggcaattgggaagaaagag |
46764779 |
T |
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| Q |
208 |
tggggaacaagtggaccc |
225 |
Q |
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|||||||||||||||||| |
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| T |
46764780 |
tggggaacaagtggaccc |
46764797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 129 - 225
Target Start/End: Complemental strand, 25655235 - 25655142
Alignment:
| Q |
129 |
taaccaaaatgactcatttttcaaacagtatatgagatcttctttggaagcatcagctgcggcaattgggaagaaagagtggggaacaagtggaccc |
225 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
25655235 |
taaccaaaataactcatttttcaaacagtatatgagatctt---tggaagcatcagttgcggcaattgggaagaaagagtggggaacaagtggaccc |
25655142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 112 - 225
Target Start/End: Original strand, 11680776 - 11680889
Alignment:
| Q |
112 |
acaaaatatctagctactaa----ccaaaatgactcatttttcaaacagtatatgagatcttctttggaagcatcagctgcggcaattgggaagaaagag |
207 |
Q |
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|||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
11680776 |
acaaaatatctagctactaattaaccaaaataactcatttttcaa-cagtatatgagatctt---tggaagcatcagctgcggcaattgggaagaaagag |
11680871 |
T |
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| Q |
208 |
tggggaacaagtggaccc |
225 |
Q |
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|||||||||||| ||||| |
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| T |
11680872 |
tggggaacaagtagaccc |
11680889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 112 - 225
Target Start/End: Original strand, 11689055 - 11689168
Alignment:
| Q |
112 |
acaaaatatctagctactaa----ccaaaatgactcatttttcaaacagtatatgagatcttctttggaagcatcagctgcggcaattgggaagaaagag |
207 |
Q |
| |
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|||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
11689055 |
acaaaatatctagctactaattaaccaaaataactcatttttcaa-cagtatatgagatctt---tggaagcatcagctgcggcaattgggaagaaagag |
11689150 |
T |
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| Q |
208 |
tggggaacaagtggaccc |
225 |
Q |
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|||||||||||| ||||| |
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| T |
11689151 |
tggggaacaagtagaccc |
11689168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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