View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14524_low_9 (Length: 316)
Name: NF14524_low_9
Description: NF14524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14524_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 22 - 301
Target Start/End: Original strand, 510289 - 510575
Alignment:
| Q |
22 |
aagtagtcttgtgctacaaattcatcgcgtgaataaatcgggtgtgatggttcgaaccccgctcttgccgatattatattatacattgtcccacatcaac |
121 |
Q |
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| T |
510289 |
aagtagtcttctgctacaaattcatagcgtgaataaatctggtgtggtggttcgaaccccgctcttgccgatattatattatacattgtcccacatcaac |
510388 |
T |
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| Q |
122 |
tcagttaaactcatggaacactagaaacattaaattaacaatagaaaacaaaacgttttatttaattgcaatgtcaacatcattaactattacaaaatct |
221 |
Q |
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| T |
510389 |
tcagttgaactcatggaacactaaaaacattaaattaacaacagaaaacaaaacgttttatctaattgcaatgtcaacatcattaactattacaaaatct |
510488 |
T |
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| Q |
222 |
tgaaaaatat------atactttttcaacggctttaacaaaacttctttatttgtgtatttt-acgcaagaaaaatatgtgactttt |
301 |
Q |
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| T |
510489 |
tgaaaaatatacagagatactttttcatcggttttaacaaaacttctttatttgtgtattttaacacaagaaaaataagtgactttt |
510575 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 179 - 234
Target Start/End: Original strand, 10069166 - 10069221
Alignment:
| Q |
179 |
ttatttaattgcaatgtcaacatcattaactattacaaaatcttgaaaaatatata |
234 |
Q |
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| T |
10069166 |
ttatctaaatgcaatgtcaacgtcatttattattacaaaattttgaaaaatatata |
10069221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 34959318 - 34959265
Alignment:
| Q |
238 |
tttcaacggctttaacaaaacttctttatttgtgtattttacgcaagaaaaata |
291 |
Q |
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| T |
34959318 |
tttcaacaactttagcaaaactactttatttgtgtattttacactagaaaaata |
34959265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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