View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14525_high_6 (Length: 309)
Name: NF14525_high_6
Description: NF14525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14525_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 17 - 292
Target Start/End: Complemental strand, 26411860 - 26411589
Alignment:
| Q |
17 |
aaaaggtgtggacgagtttggtctcggagctcactagagtgaggaaaggcttcgaggctcaatgagctctaacgaaattacctacatattcctcacaaat |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
26411860 |
aaaaggtgtggacgagtttggtctcggagctcactagagtgaggaaaagcttcgaggctcaatgagctctaacgaagttacctacatattcctcacaaat |
26411761 |
T |
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| Q |
117 |
gaggttctcatgtaagtaacggaattcgaactcaagttgttgtacaatttgagctgaatccttatcaaaccattgacatattctaaacttttcttgaaaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26411760 |
gaggttctcatgtaagtaacggaattcgaactcaagttgttgtacaatttgagctgaatccttatcaaaccattgacatattctaaacttttcttgaaaa |
26411661 |
T |
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| Q |
217 |
gagtacttcttccctcataattttttattttgcagtaaatcagattattctcaacataccattcctcgaaagaata |
292 |
Q |
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||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
26411660 |
gagta---cttccctcataa-ttttaattttgcagtaaatcagattattctcaacataccattcctcaaaagaata |
26411589 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 13818140 - 13818188
Alignment:
| Q |
33 |
tttggtctcggagctcactagagtgaggaaaggcttcgaggctcaatga |
81 |
Q |
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||||||| |||||||||||||||| ||||| ||||| ||||||||||| |
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| T |
13818140 |
tttggtcccggagctcactagagttgggaaaagcttcaaggctcaatga |
13818188 |
T |
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