View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14525_low_1 (Length: 608)
Name: NF14525_low_1
Description: NF14525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14525_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 102 - 595
Target Start/End: Complemental strand, 22427354 - 22426867
Alignment:
| Q |
102 |
taataaatactcatcagaaaacaaaaaccaaacttcaacaccaacttcagaaataacttcagacagcagaaaatcttgggctgaagaagtcgaagaagaa |
201 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
22427354 |
taataaatactcatcagaaaacaaaaaccaaacgtcaacacgaacttcagaaataacttcagacagtagaaaatcttgggttgaagaagtcgaagaagaa |
22427255 |
T |
|
| Q |
202 |
gatgaagcaatnnnnnnngattcaaccatccaaacaaacgatcctgtagacaatgaaatgggaaggtatgaagcatatgtcattttcgacggtccaatga |
301 |
Q |
| |
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|||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
22427254 |
gatgaagcaagaaaaaatgattcaaccatccaaacaagcgatcacgtagacaatgaaatgggaaagtttgaagcatatgtcattttcgacggtccaatga |
22427155 |
T |
|
| Q |
302 |
aagacatctacagacaataatgggcaattgcaaaacaacatatcattggcaagaatgtacgccacaaatgctacaagacaatgaaagaagctgaacatga |
401 |
Q |
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|||||||||| ||| ||| ||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||| |||||||| ||||||| |
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| T |
22427154 |
aagacatctatagaaaat---gggcaattgcaaaacaacatatcattgacaagaatgtacaccacaaaggctacaagacaatgtaagaagctaaacatga |
22427058 |
T |
|
| Q |
402 |
attttacggttcatacaaagaggttacaacaacgaaaaacctccaaagatctccaacaatggagtctaaaaagaagatttcaattgccaaaatctgtcag |
501 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
22427057 |
attttacggttcatacaaagaggttacaacaacgaaaaacctccaaagatctccaacaatggagtctaaaaagaagatttcaattgacaaaatccgtcag |
22426958 |
T |
|
| Q |
502 |
ctcgaacatcaaaagaatttccaaataactaatctaacttatatggatcagtttagtctcagatggaaatggataaacaactatgtagaataat |
595 |
Q |
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| T |
22426957 |
ctcgaacatcaaaagaatttccaaataactaatctaacttatatgg---agtttagtctcagatggaaattgataaacaactatgtagaataat |
22426867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 134 - 591
Target Start/End: Original strand, 41616192 - 41616643
Alignment:
| Q |
134 |
cttcaacaccaacttcagaaataacttcagacagcagaaaatcttgggctgaagaagtcgaagaagaagatgaagcaatnnnnnnngattcaaccatcca |
233 |
Q |
| |
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||||| ||| ||||||||||| ||| |||||||||| |||||| |||||||||||||| ||||||||||||||||||| | |||||||||||| |
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| T |
41616192 |
cttcagcactaacttcagaaacaacctcagacagcaaaaaatcatgggctgaagaagttgaagaagaagatgaagcaagaaaaaatggttcaaccatcca |
41616291 |
T |
|
| Q |
234 |
aacaaacgatcctgtagacaatgaaatgggaaggtatgaagcatatgtcattttcgacggtccaatgaaagacatctacagacaataatgggcaattgca |
333 |
Q |
| |
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|| || ||||| ||||| ||||| ||||||| || ||||||||||||||||||||||||||||||||| | |||||||||| ||| ||||||||||| |
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| T |
41616292 |
aataagcgatctcgtagataatgatatgggaaagtttgaagcatatgtcattttcgacggtccaatgaagggcatctacagaaaat---gggcaattgca |
41616388 |
T |
|
| Q |
334 |
aaacaacatatcattggcaagaatgtacgccacaaatgctacaagacaatgaaagaagctgaacatgaattttacggttcatacaaagaggttacaacaa |
433 |
Q |
| |
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|||||||||||||| || |||||||||||||||||| |||||||||| ||||||||||||||||||| | || |||||||||||||||||||||||| | |
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| T |
41616389 |
aaacaacatatcatcggtaagaatgtacgccacaaaggctacaagacgatgaaagaagctgaacatgcacttgacggttcatacaaagaggttacaatag |
41616488 |
T |
|
| Q |
434 |
cgaaaaacctccaaagatctccaacaatggagtctaaaaagaagatttcaattgccaaaatctgtcagctcgaacatcaaaagaatttccaaataactaa |
533 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
41616489 |
cgaaaaacctccaaagatctccaacaatggagtctaaaaagaagatgtcaattgacaaaatccgtcagctcgaacatcaaaagaatttccaaataactga |
41616588 |
T |
|
| Q |
534 |
tctaacttatatggatcagtttagtctcagatggaaatggataaacaactatgtagaa |
591 |
Q |
| |
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|| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
41616589 |
tccaacttatatgg---agtttagtctcagatggaaatagataaacaactatgtagaa |
41616643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 141 - 591
Target Start/End: Original strand, 2620028 - 2620473
Alignment:
| Q |
141 |
accaacttcagaaataacttcagacagcagaaaatcttgggctgaagaagtcgaagaagaagatgaagcaatnnnnnnn-gattcaaccatccaaacaaa |
239 |
Q |
| |
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|||||||||||||| ||| ||||||| || |||||| |||||||||||||| ||||||||||||||||||| | |||||||||||||| || |
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| T |
2620028 |
accaacttcagaaacaacctcagacaacaaaaaatcatgggctgaagaagttgaagaagaagatgaagcaagaaaaaaatggttcaaccatccaaataag |
2620127 |
T |
|
| Q |
240 |
cgatcctgtagacaatgaaatgggaaggtatgaagcatatgtcattttcgacggtccaatgaaagacatctacagacaataatgggcaattgcaaaacaa |
339 |
Q |
| |
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||||| ||||| ||||||||||||| || ||||||||||||||||||||||||||||||||| | |||||||||| ||| ||||||||||||||||| |
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| T |
2620128 |
cgatctcgtagataatgaaatgggaaagtttgaagcatatgtcattttcgacggtccaatgaagggcatctacagaaaat---gggcaattgcaaaacaa |
2620224 |
T |
|
| Q |
340 |
catatcattggcaagaatgtacgccacaaatgctacaagacaatgaaagaagctgaacatgaattttacggttcatacaaagaggttacaacaacgaaaa |
439 |
Q |
| |
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||| |||| || |||||||||||||||||| |||||||||||||||||||||||||||| | | ||||| ||||||||||||||||||||| | | |||| |
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| T |
2620225 |
catgtcatcggtaagaatgtacgccacaaaggctacaagacaatgaaagaagctgaacaggcactttacagttcatacaaagaggttacaatagcaaaaa |
2620324 |
T |
|
| Q |
440 |
acctccaaagatctccaacaatggagtctaaaaagaagatttcaattgccaaaatctgtcagctcgaacatcaaaagaatttccaaataactaatctaac |
539 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||| ||||||||||||||||||||||||||||| ||| ||| |
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| T |
2620325 |
acctccaaagatctccaacaatggagtctaaaaagaagatgtcaattgacaaaatccgtcaggtcgaacatcaaaagaatttccaaataactgatcaaac |
2620424 |
T |
|
| Q |
540 |
ttatatggatcagtttagtctcagatggaaatggataaacaactatgtagaa |
591 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2620425 |
ttatatgg---agtttagtctcagatggaaatggataaacaactatgtagaa |
2620473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 173; Significance: 1e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 138 - 509
Target Start/End: Original strand, 4716512 - 4716880
Alignment:
| Q |
138 |
aacaccaacttcagaaataacttcagacagcagaaaatcttgggctgaagaagtcgaagaagaagatgaagcaatnnnnnnngattcaaccatccaaaca |
237 |
Q |
| |
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||||||||||||||||| ||| |||||| || |||||| |||||||||||||||||||||||||||||||||| | |||||||||||||| | |
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| T |
4716512 |
aacaccaacttcagaaacaaccacagacaacaaaaaatcatgggctgaagaagtcgaagaagaagatgaagcaagaaaaaatggttcaaccatccaaata |
4716611 |
T |
|
| Q |
238 |
aacgatcctgtagacaatgaaatgggaaggtatgaagcatatgtcattttcgacggtccaatgaaagacatctacagacaataatgggcaattgcaaaac |
337 |
Q |
| |
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| ||||| ||||||||||||||||||| || ||||||||||||||| || |||||||||||||| | |||||||||| ||| ||||||||||||| | |
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|
| T |
4716612 |
agcgatctcgtagacaatgaaatgggaatgtttgaagcatatgtcatatttgacggtccaatgaagggcatctacagaaaat---gggcaattgcaaagc |
4716708 |
T |
|
| Q |
338 |
aacatatcattggcaagaatgtacgccacaaatgctacaagacaatgaaagaagctgaacatgaattttacggttcatacaaagaggttacaacaacgaa |
437 |
Q |
| |
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|||||||||| | ||| || |||||||| ||| |||||||||||||||||||||||||| | | | ||||| ||||||||||||||||||||||| |||| |
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| T |
4716709 |
aacatatcatcgacaacaaggtacgccataaaggctacaagacaatgaaagaagctgaataggcactttacagttcatacaaagaggttacaacagcgaa |
4716808 |
T |
|
| Q |
438 |
aaacctccaaagatctccaacaatggagtctaaaaagaagatttcaattgccaaaatctgtcagctcgaaca |
509 |
Q |
| |
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||| || || ||||||||||||||||| |||| ||||||||| ||||||| |||||| ||||||||||||| |
|
|
| T |
4716809 |
aaatctacatagatctccaacaatggaatctagaaagaagatgtcaattgacaaaattcgtcagctcgaaca |
4716880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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