View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14525_low_2 (Length: 530)
Name: NF14525_low_2
Description: NF14525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14525_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 399; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 16 - 446
Target Start/End: Original strand, 11849949 - 11850379
Alignment:
| Q |
16 |
tagtcaacatctctttgactggaaagatgatgggtcgaaaccgctcggatggaaatgtaggctttccattgccttggatgttgctagaggtgttgaatat |
115 |
Q |
| |
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|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11849949 |
tagtcaacatatctttgactggaaagacgatgggtcgaaaccgctcggatggaaatgtaggctttccattgccttggatgttgctagaggtgttgaatat |
11850048 |
T |
|
| Q |
116 |
cttcatggtctggctcagcaaattttcatccacagggatctgaaaccatcaaatatcttgcttggagatgatatgcgcgctaaagtagccgactttggat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11850049 |
cttcatggtctggctcagcaaattttcatccacagggatctgaagccatcaaatatcttgcttggagatgatatgcgcgctaaagtagccgactttggat |
11850148 |
T |
|
| Q |
216 |
tagttcgacttgctccagaaggacaaacttcattcgcgactagacttgcaggaacttttggttatttggcaccagagtatgcaggtaatcacatgttaat |
315 |
Q |
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||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11850149 |
tagttcggcttgctccagaaggacaaacttcatttgcgactagacttgcaggaacttttggttatttggcaccagagtatgcaggtaatcacatgttaat |
11850248 |
T |
|
| Q |
316 |
tataatttagaataatttttgttgcattactgttttttattgcaaatgttaattgtgtaggtttctactttagtctcagatgaactatagagtatagaaa |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
11850249 |
tataatttagaataatttttgttgcattactgttttttattgcacatgttaattgtgtaggtttctactttagtctcagatgaactatagagtatagaga |
11850348 |
T |
|
| Q |
416 |
caattttttgcaacattctcaaatactatgc |
446 |
Q |
| |
|
||| ||||||||||||||||||||||||||| |
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|
| T |
11850349 |
caaatttttgcaacattctcaaatactatgc |
11850379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 339
Target Start/End: Original strand, 11836578 - 11836900
Alignment:
| Q |
16 |
tagtcaacatctctttgactggaaagatgatgggtcgaaaccgctcggatggaaatgtaggctttccattgccttggatgttgctagaggtgttgaatat |
115 |
Q |
| |
|
|||||||||||||||||| |||||||| || |||| ||||||||| |||||||| | ||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
11836578 |
tagtcaacatctctttgattggaaagacgacgggttgaaaccgcttggatggaagagaaggctttccattgccttagatgttgctagaggtgttgaatat |
11836677 |
T |
|
| Q |
116 |
cttcatggtctggctcagcaaattttcatccacagggatctgaaaccatcaaatatcttgcttggagatgatatgcgcgctaaagtagccgactttggat |
215 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
11836678 |
cttcatggtctggctcagcaaattttcatccacagggatctgaaaccatcgaatatcttgcttggagatgatatgcgtgctaaagtagccgactttggat |
11836777 |
T |
|
| Q |
216 |
tagttcgacttgctccagaaggacaaacttcattcgcgactagacttgcaggaacttttggttatttggcaccagagtatgcaggtaatcacatgttaat |
315 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||| |||||||||||| ||||| ||| |||||||||||||||||||||| ||||| ||||| |
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|
| T |
11836778 |
tagttcgacttgctccagaaggacaagcttcattccagactaaacttgcaggaacctttggatatatggcaccagagtatgcaggtaa-cacattttaat |
11836876 |
T |
|
| Q |
316 |
tataatttagaataatttttgttg |
339 |
Q |
| |
|
||||||||||||| ||||||||| |
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|
| T |
11836877 |
tataatttagaattttttttgttg |
11836900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 16 - 342
Target Start/End: Complemental strand, 11857180 - 11856851
Alignment:
| Q |
16 |
tagtcaacatctctttgactggaaagatgatgggtcgaaaccgctcggatggaaatgtaggctttccattgccttggatgttgctagaggtgttgaatat |
115 |
Q |
| |
|
|||||||||||||||||| |||||||| || |||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
11857180 |
tagtcaacatctctttgagtggaaagacgacgggttgaaaccgctcggatggaagagtaggctttccattgccttggatgttgcccgaggtgttgaatat |
11857081 |
T |
|
| Q |
116 |
cttcatggtctggctcagcaaattttcatccacagggatctgaaaccatcaaatatcttgcttggagatgatatgcgcgctaaagtagccgactttggat |
215 |
Q |
| |
|
|| ||||||||||| || ||||||||||| || || |||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
11857080 |
ctccatggtctggcacaacaaattttcattcatagagatctgaaaccaacaaatattttgcttggagatgatatgcgcgctaaagttgccgactttggat |
11856981 |
T |
|
| Q |
216 |
tagttcgacttgctccagaaggacaaacttcatt---cgcgactagacttgcaggaacttttggttatttggcaccagagtatgcaggtaatcacatgtt |
312 |
Q |
| |
|
||||||| || |||||||||||| || ||||||| | ||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||| || |
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|
| T |
11856980 |
tagttcggctagctccagaaggaaaagcttcattaatccagactagatttgcaggaacttttggatatatggcaccagagtatgcaggtaatcacatttt |
11856881 |
T |
|
| Q |
313 |
aattataatttagaataatttttgttgcat |
342 |
Q |
| |
|
|||||||||||||| | |||||||||||| |
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|
| T |
11856880 |
aattataatttagatttttttttgttgcat |
11856851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 473 - 529
Target Start/End: Original strand, 11850407 - 11850463
Alignment:
| Q |
473 |
atcaaattttatcttgaaagaactgtattgagaaaacaggcaaacatgattcatatt |
529 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11850407 |
atcaaattttatcttgaaagaactgtattgagaaaacaggcaaacatgattcatatt |
11850463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 411 - 446
Target Start/End: Complemental strand, 11856766 - 11856731
Alignment:
| Q |
411 |
agaaacaattttttgcaacattctcaaatactatgc |
446 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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|
| T |
11856766 |
agaaacaattttttgcaacattctcaaatactatgc |
11856731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 125; Significance: 4e-64; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 16 - 320
Target Start/End: Complemental strand, 27443958 - 27443654
Alignment:
| Q |
16 |
tagtcaacatctctttgactggaaagatgatgggtcgaaaccgctcggatggaaatgtaggctttccattgccttggatgttgctagaggtgttgaatat |
115 |
Q |
| |
|
||||||||||||||||||| ||||||| || || | |||| |||| |||||| |||||||||||||| ||||||||||| ||||| ||||||||| |
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|
| T |
27443958 |
tagtcaacatctctttgaccggaaagacgacggattgaaaggactcgaatggaagacaaggctttccattgcattggatgttgcaagaggcgttgaatat |
27443859 |
T |
|
| Q |
116 |
cttcatggtctggctcagcaaattttcatccacagggatctgaaaccatcaaatatcttgcttggagatgatatgcgcgctaaagtagccgactttggat |
215 |
Q |
| |
|
||||||| | | || || |||| |||||||||||||||||| || |||||||||||||||||||||||| ||||| | |||||||||||||||||||||| |
|
|
| T |
27443858 |
cttcatgattttgcacaacaaagtttcatccacagggatcttaagccatcaaatatcttgcttggagataatatgtgtgctaaagtagccgactttggat |
27443759 |
T |
|
| Q |
216 |
tagttcgacttgctccagaaggacaaacttcattcgcgactagacttgcaggaacttttggttatttggcaccagagtatgcaggtaatcacatgttaat |
315 |
Q |
| |
|
||||||| |||| || ||||||| || |||| || |||| |||||||| |||||||| || | |||||||||||||||||||||||||| ||||| |
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|
| T |
27443758 |
tagttcggcttgttcaagaaggaaaagcttcgatccatactaagcttgcagggacttttggatacattgcaccagagtatgcaggtaatcacattttaat |
27443659 |
T |
|
| Q |
316 |
tataa |
320 |
Q |
| |
|
||||| |
|
|
| T |
27443658 |
tataa |
27443654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 86 - 302
Target Start/End: Original strand, 33056587 - 33056803
Alignment:
| Q |
86 |
gccttggatgttgctagaggtgttgaatatcttcatggtctggctcagcaaattttcatccacagggatctgaaaccatcaaatatcttgcttggagatg |
185 |
Q |
| |
|
||||| |||||||| || |||||||| || || ||| | ||||||| |||| ||||| ||||| || ||||||| |||||||| | |||||||||| |
|
|
| T |
33056587 |
gccttagatgttgcaaggggtgttgagtacctacatagcttggctcatcaaagcttcatacacagagacttgaaaccttcaaatattctccttggagatg |
33056686 |
T |
|
| Q |
186 |
atatgcgcgctaaagtagccgactttggattagttcgacttgctccagaaggacaaacttcattcgcgactagacttgcaggaacttttggttatttggc |
285 |
Q |
| |
|
||||| | || || || || || ||||| | || || |||||||||||||| || ||||| | | || ||| ||||||||||||| || |||||||| |
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|
| T |
33056687 |
atatgagggcaaaggtcgcagattttggtctcgtgcgtcttgctccagaagggaaagcttcaattgaaacaagaattgcaggaactttcggatatttggc |
33056786 |
T |
|
| Q |
286 |
accagagtatgcaggta |
302 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
33056787 |
accagaatatgcaggta |
33056803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 7e-38; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 83 - 303
Target Start/End: Complemental strand, 44796805 - 44796585
Alignment:
| Q |
83 |
attgccttggatgttgctagaggtgttgaatatcttcatggtctggctcagcaaattttcatccacagggatctgaaaccatcaaatatcttgcttggag |
182 |
Q |
| |
|
||||| || ||||||||||||||| |||||||||||||||| | | || |||||||| |||||||||||| | |||||||| || || |||||||||| |
|
|
| T |
44796805 |
attgctttagatgttgctagaggtattgaatatcttcatgggttaacccaacaaatttttatccacagggatatcaaaccatctaacattttgcttggag |
44796706 |
T |
|
| Q |
183 |
atgatatgcgcgctaaagtagccgactttggattagttcgacttgctccagaaggacaaacttcattcgcgactagacttgcaggaacttttggttattt |
282 |
Q |
| |
|
| || ||||| || |||||| | ||||||||||| ||||| |||||||| |||||| || ||||||| || |||||||| ||||||||||| ||| | |
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|
| T |
44796705 |
aagacatgcgagcaaaagtatctgactttggattggttcggcttgctcctgaaggaaaagcttcatttcaaaccagacttgccggaacttttggatatat |
44796606 |
T |
|
| Q |
283 |
ggcaccagagtatgcaggtaa |
303 |
Q |
| |
|
|||||||||||||||| |||| |
|
|
| T |
44796605 |
ggcaccagagtatgcatgtaa |
44796585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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