View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14525_low_3 (Length: 504)
Name: NF14525_low_3
Description: NF14525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14525_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 18 - 493
Target Start/End: Complemental strand, 48487671 - 48487196
Alignment:
| Q |
18 |
agcccaaactcaataacgccttttactctttccatgatggcgagatccactccaattcagcttccacagatttgaatattgtagctgaaaatgcacctcc |
117 |
Q |
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| T |
48487671 |
agcccaaactcaataacgccttttactctttccatgatggcgagatccactccaattcagcttccacagatttgaatattgtagctgaaaatgcacctcc |
48487572 |
T |
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| Q |
118 |
attgtcgctatcatccagaggccgcgttaaaatgcttccatccaagttcaaggactccgtacttctcggtacacagaagaagaataatcgacaaatacaa |
217 |
Q |
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| T |
48487571 |
attgtcgcgagcatccagaggccgcgttaaaatgcttccatccaagttcaaggactccgtacttctcggtacacagaagaagaataatcgacaaatacaa |
48487472 |
T |
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| Q |
218 |
aactccaagctcagttttgaaggtgagagtagtgacactggaattagatttgtaaataagggaaaggaaaacaaacgcgatccgaaaaaagagagtgata |
317 |
Q |
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| T |
48487471 |
aactccaagctcagttttgaaggtgagagtagtgatactgtaattagatttgtaaataagggaaaggaaaacaaatgcgatccgaaaaaagagagtgata |
48487372 |
T |
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| Q |
318 |
atggttttgatgaatttgattatgagaagcatgctaagtcgtttaagagcattaaaaagacggttaaagggagtcgtatgttattggttaaagtggagag |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
48487371 |
atggttttgatgaatttgattatgagaagcatgctaagtcgtttaagagcattaaaaagacggttaaagggagtcgaatgttattggttaaagcggagag |
48487272 |
T |
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| Q |
418 |
tggaaattgttttgatgaaaagggtaaaaaagggaaagagattttcaaactagtggattttcatttgggtgatatt |
493 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48487271 |
tggaaattgttttgatgaaaagggtaaaaaagggaaagagattttcaaactagtggattttcatttgggtgatatt |
48487196 |
T |
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