View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14525_low_5 (Length: 415)

Name: NF14525_low_5
Description: NF14525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14525_low_5
NF14525_low_5
[»] chr1 (3 HSPs)
chr1 (20-231)||(30807623-30807836)
chr1 (293-387)||(21075940-21076035)
chr1 (293-389)||(23405474-23405571)
[»] chr4 (4 HSPs)
chr4 (112-232)||(41417109-41417229)
chr4 (294-348)||(27387716-27387770)
chr4 (294-339)||(10129632-10129679)
chr4 (293-337)||(55322333-55322377)
[»] chr6 (8 HSPs)
chr6 (114-207)||(1708072-1708165)
chr6 (293-389)||(7422701-7422798)
chr6 (293-392)||(13886592-13886692)
chr6 (294-392)||(4834770-4834869)
chr6 (293-389)||(7415693-7415790)
chr6 (112-162)||(12476711-12476761)
chr6 (292-389)||(33242902-33243000)
chr6 (294-389)||(7426640-7426736)
[»] chr3 (4 HSPs)
chr3 (305-391)||(14029379-14029466)
chr3 (294-389)||(36326544-36326640)
chr3 (293-341)||(18319503-18319551)
chr3 (308-348)||(32414849-32414889)
[»] chr7 (5 HSPs)
chr7 (114-162)||(24801312-24801360)
chr7 (293-393)||(30452747-30452848)
chr7 (293-389)||(42513061-42513158)
chr7 (294-393)||(30456356-30456456)
chr7 (305-389)||(11206525-11206610)
[»] chr5 (2 HSPs)
chr5 (294-389)||(41709554-41709650)
chr5 (294-389)||(8123582-8123678)
[»] chr8 (2 HSPs)
chr8 (293-352)||(44762059-44762118)
chr8 (294-387)||(44765330-44765424)
[»] chr2 (1 HSPs)
chr2 (293-389)||(31211867-31211964)


Alignment Details
Target: chr1 (Bit Score: 183; Significance: 7e-99; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 20 - 231
Target Start/End: Original strand, 30807623 - 30807836
Alignment:
Q  20 aatgttgattataagggagtaggcaaatataaagttataaaatgtttggaacacgaattttgatggtagtggaatgataattatttatgaaaggatttta 119  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30807623 aatgttgattattagggagtaggcaaatataaagttgtaaaatgtttggaacacgacttttgatggtagtggaatgataattatttatgaaaggatttta 30807722  T
Q  120 gcacctcttagatctctctccatgtattagattattttgaaagttccac--tttgtgtgactaaacaactaacttcgtggtaaagctctagagaatccaa 217  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||    
T  30807723 gcacctcttagatctctctccatgaattagattattttgaaagttccaccgtgtgtgtgactaaacaactaacttcgtggtaaagctctagagaatccaa 30807822  T
Q  218 gatgagaatgagtt 231  Q
    ||||||||||||||    
T  30807823 gatgagaatgagtt 30807836  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 293 - 387
Target Start/End: Original strand, 21075940 - 21076035
Alignment:
Q  293 atgatacgatcgaattcgagtagggatcacactttagaatttagagagagaaactatagacaatag-aaggaaattggttatattttttattgatt 387  Q
    ||||||||||| ||||||||||||||| |||||  ||||||||| ||||||||||| ||| || || |||||||||   ||||||||| |||||||    
T  21075940 atgatacgatcaaattcgagtagggatgacactccagaatttagcgagagaaactacagataaaagaaaggaaattcactatatttttcattgatt 21076035  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 293 - 389
Target Start/End: Original strand, 23405474 - 23405571
Alignment:
Q  293 atgatacgatcgaattcgagtagggatcacactttagaatttagagagagaaactatagacaatag-aaggaaattggttatattttttattgattct 389  Q
    ||||||||| | ||||| |||||||||||||||  ||||||||||| ||||||||| ||| || || ||| |||||  |||||||||| |||||||||    
T  23405474 atgatacgacccaattcaagtagggatcacactccagaatttagagggagaaactagagaaaagagaaagaaaattcattatatttttcattgattct 23405571  T

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Target: chr4 (Bit Score: 109; Significance: 1e-54; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 112 - 232
Target Start/End: Original strand, 41417109 - 41417229
Alignment:
Q  112 ggattttagcacctcttagatctctctccatgtattagattattttgaaagttccactttgtgtgactaaacaactaacttcgtggtaaagctctagaga 211  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  41417109 ggattttagcacctcttagatctctctccatgaattagattattttaaaagttccactgtgtgtgactaaacaactaacttcgtggtaaagctctagaga 41417208  T
Q  212 atccaagatgagaatgagttg 232  Q
    |||||||||||||||||||||    
T  41417209 atccaagatgagaatgagttg 41417229  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 348
Target Start/End: Complemental strand, 27387770 - 27387716
Alignment:
Q  294 tgatacgatcgaattcgagtagggatcacactttagaatttagagagagaaacta 348  Q
    |||||||| | |||||||||||||||||||||  ||||||||||| |||||||||    
T  27387770 tgatacgacccaattcgagtagggatcacactccagaatttagagggagaaacta 27387716  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 339
Target Start/End: Original strand, 10129632 - 10129679
Alignment:
Q  294 tgatacgatcgaattcgagtagggatcacact--ttagaatttagaga 339  Q
    |||||||| | |||||||||||||||||||||  ||||||||||||||    
T  10129632 tgatacgacccaattcgagtagggatcacactccttagaatttagaga 10129679  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 293 - 337
Target Start/End: Original strand, 55322333 - 55322377
Alignment:
Q  293 atgatacgatcgaattcgagtagggatcacactttagaatttaga 337  Q
    ||||||||| | |||||||||||||||||||||  ||||||||||    
T  55322333 atgatacgacccaattcgagtagggatcacactccagaatttaga 55322377  T

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Target: chr6 (Bit Score: 78; Significance: 3e-36; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 114 - 207
Target Start/End: Original strand, 1708072 - 1708165
Alignment:
Q  114 attttagcacctcttagatctctctccatgtattagattattttgaaagttccactttgtgtgactaaacaactaacttcgtggtaaagctcta 207  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  1708072 attttagcacctcttagatctctctccatgaattagattaatttgaaagttccactgtgtgtgactaaacaactaacttcgtggtaaagttcta 1708165  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 293 - 389
Target Start/End: Complemental strand, 7422798 - 7422701
Alignment:
Q  293 atgatacgatcgaattcgagtagggatcacactttagaatttagagagagaaactatagacaatag-aaggaaattggttatattttttattgattct 389  Q
    ||||||||| | |||||||||||||||||||||  |||| |||||||||||||||| ||| || || ||| |||||  |||||||||| |||||||||    
T  7422798 atgatacgacccaattcgagtagggatcacactcaagaaattagagagagaaactagagaaaagagaaagaaaattcattatatttttcattgattct 7422701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 293 - 392
Target Start/End: Complemental strand, 13886692 - 13886592
Alignment:
Q  293 atgatacgatcgaattcgagtagggatcacactttagaatttagagagagaaactatagacaatag-aaggaaattggttatattttttattgattctaa 391  Q
    ||||||||| | |||| ||||||||||||||||  ||||||||||| ||||||||| ||| || || ||| |||||  |||||||||| |||||||||||    
T  13886692 atgatacgacccaatttgagtagggatcacactccagaatttagagggagaaactagagaaaagagaaagaaaattcattatatttttcattgattctaa 13886593  T
Q  392 t 392  Q
    |    
T  13886592 t 13886592  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 294 - 392
Target Start/End: Complemental strand, 4834869 - 4834770
Alignment:
Q  294 tgatacgatcgaattcgagtagggatcacactttagaatttagagagagaaactatagacaatag-aaggaaattggttatattttttattgattctaat 392  Q
    |||||||| | |||| ||||||||||||||||  ||||||||||| ||||||||| ||| || || ||| |||||  |||||||||| ||||||||||||    
T  4834869 tgatacgacccaatttgagtagggatcacactccagaatttagagggagaaactagagaaaagagaaagaaaattcattatatttttcattgattctaat 4834770  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 293 - 389
Target Start/End: Complemental strand, 7415790 - 7415693
Alignment:
Q  293 atgatacgatcgaattcgagtagggatcacactttagaatttagagagagaaactatagacaatag-aaggaaattggttatattttttattgattct 389  Q
    ||||||||||| || | ||||||||||||||||  |||| |||||||||||||||| ||| || || ||| |||||  |||||||||| |||||||||    
T  7415790 atgatacgatccaacttgagtagggatcacactccagaaattagagagagaaactagagaaaagagaaagaaaattcattatatttttcattgattct 7415693  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 162
Target Start/End: Complemental strand, 12476761 - 12476711
Alignment:
Q  112 ggattttagcacctcttagatctctctccatgtattagattattttgaaag 162  Q
    |||||||||||||| ||||||||| ||||||| ||||||||| ||||||||    
T  12476761 ggattttagcaccttttagatctcactccatgaattagattaatttgaaag 12476711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 292 - 389
Target Start/End: Complemental strand, 33243000 - 33242902
Alignment:
Q  292 gatgatacgatcgaattcgagtagggatcacactttagaatttagagagagaaactatagacaatag-aaggaaattggttatattttttattgattct 389  Q
    |||||||||| | ||||||||||| |||||||||  |||| |||||||||||||||| | | || || || ||||||  |||||||||| |||||||||    
T  33243000 gatgatacgacccaattcgagtagagatcacactccagaaattagagagagaaactagaaataaaagaaaagaaattcattatatttttcattgattct 33242902  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 389
Target Start/End: Complemental strand, 7426736 - 7426640
Alignment:
Q  294 tgatacgatcgaattcgagtagggatcacactttagaatttagagagagaaactatagacaatag-aaggaaattggttatattttttattgattct 389  Q
    |||||||| | |||||||||||||||||||||  |||| ||||| ||||||| || ||| || || ||| |||||  |||||||||| |||||||||    
T  7426736 tgatacgacccaattcgagtagggatcacactccagaaattagaaagagaaattagagaaaagagaaagaaaattcattatatttttcattgattct 7426640  T

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Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 305 - 391
Target Start/End: Complemental strand, 14029466 - 14029379
Alignment:
Q  305 aattcgagtagggatcacactttagaatttagagagagaaactatagacaatag-aaggaaattggttatattttttattgattctaa 391  Q
    |||||||||||||||||||||  ||||||||||| ||||||||| ||| || || |||||||||  |||||||||| |||||||||||    
T  14029466 aattcgagtagggatcacactccagaatttagagtgagaaactagagataaaagaaaggaaattcattatatttttcattgattctaa 14029379  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 294 - 389
Target Start/End: Complemental strand, 36326640 - 36326544
Alignment:
Q  294 tgatacgatcgaattcgagtagggatcacactttagaatttagagagagaaactatagacaatag-aaggaaattggttatattttttattgattct 389  Q
    |||||||| | |||||||||||||||||||||  ||||||||||| ||||||||| ||| || || ||| |||||  |||||||||| |||||||||    
T  36326640 tgatacgacccaattcgagtagggatcacactccagaatttagagggagaaactagagaaaagagaaagaaaattcattatatttttcattgattct 36326544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 293 - 341
Target Start/End: Complemental strand, 18319551 - 18319503
Alignment:
Q  293 atgatacgatcgaattcgagtagggatcacactttagaatttagagaga 341  Q
    ||||||||| |  |||||||||||||||||||| ||||| |||||||||    
T  18319551 atgatacgacccgattcgagtagggatcacactctagaaattagagaga 18319503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 348
Target Start/End: Complemental strand, 32414889 - 32414849
Alignment:
Q  308 tcgagtagggatcacactttagaatttagagagagaaacta 348  Q
    ||||||||||||||||||  | |||||||||||||||||||    
T  32414889 tcgagtagggatcacactccaaaatttagagagagaaacta 32414849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 114 - 162
Target Start/End: Original strand, 24801312 - 24801360
Alignment:
Q  114 attttagcacctcttagatctctctccatgtattagattattttgaaag 162  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  24801312 attttagcacctcttagatctctctccatgaattagattaatttgaaag 24801360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 293 - 393
Target Start/End: Complemental strand, 30452848 - 30452747
Alignment:
Q  293 atgatacgatcgaattcgagtagggatcacactttagaatttagagagagaaactatagacaatag-aaggaaattggttatattttttattgattctaa 391  Q
    ||||||||| | |||||||||||||||||||||  ||||||||||| ||||||||| ||| || || ||| |||||  |||||||||| |||  ||||||    
T  30452848 atgatacgacccaattcgagtagggatcacactccagaatttagagggagaaactagagaaaagagaaagaaaattcattatatttttcattcgttctaa 30452749  T
Q  392 tc 393  Q
    ||    
T  30452748 tc 30452747  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 293 - 389
Target Start/End: Original strand, 42513061 - 42513158
Alignment:
Q  293 atgatacgatcgaattcgagtagggatcacactttagaatttagagagagaaactatagacaatag-aaggaaattggttatattttttattgattct 389  Q
    ||||||||| | |||||||||||||||||||||  |||| |||||| ||||||||| ||| || || ||| |||||  |||||||||| |||||||||    
T  42513061 atgatacgacccaattcgagtagggatcacactccagaaattagagggagaaactagagaaaagagaaagaaaattcattatatttttcattgattct 42513158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 393
Target Start/End: Complemental strand, 30456456 - 30456356
Alignment:
Q  294 tgatacgatcgaattcgagtagggatcacactttagaatttagagagagaaactatagacaatag-aaggaaattggttatattttttattgattctaat 392  Q
    |||||||| | |||||||||||||||||||||  ||||||||||| ||||||||| ||| || || ||| |||||  |||||||||| |||  |||||||    
T  30456456 tgatacgacccaattcgagtagggatcacactccagaatttagagggagaaactagagaaaagagaaagaaaattcattatatttttcattcgttctaat 30456357  T
Q  393 c 393  Q
    |    
T  30456356 c 30456356  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 305 - 389
Target Start/End: Complemental strand, 11206610 - 11206525
Alignment:
Q  305 aattcgagtagggatcacactttagaatttagagagagaaactatagacaatag-aaggaaattggttatattttttattgattct 389  Q
    ||||||||||| |||||||||  ||||||||||| ||||||||| ||| || || ||| |||||  |||||||||| |||||||||    
T  11206610 aattcgagtagagatcacactccagaatttagagggagaaactagagaaaagagaaagaaaattcattatatttttcattgattct 11206525  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 294 - 389
Target Start/End: Complemental strand, 41709650 - 41709554
Alignment:
Q  294 tgatacgatcgaattcgagtagggatcacactttagaatttagagagagaaactatagacaatag-aaggaaattggttatattttttattgattct 389  Q
    |||||||| | ||||||||||| |||||||||  ||||||||||| ||||||||||||| || || ||| |||||  |||||||||| |||||||||    
T  41709650 tgatacgacccaattcgagtagagatcacactccagaatttagagggagaaactatagaaaagagaaagaaaattcattatatttttcattgattct 41709554  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 389
Target Start/End: Complemental strand, 8123678 - 8123582
Alignment:
Q  294 tgatacgatcgaattcgagtagggatcacactttagaatttagagagagaaactatagacaatag-aaggaaattggttatattttttattgattct 389  Q
    |||||||| | |||||||||| ||||||||||| |||| |||||| |||||| || ||| || || ||| |||||  |||||||||| |||||||||    
T  8123678 tgatacgacccaattcgagtatggatcacacttcagaaattagagggagaaattaaagaaaagagaaagaaaattcattatatttttcattgattct 8123582  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 293 - 352
Target Start/End: Complemental strand, 44762118 - 44762059
Alignment:
Q  293 atgatacgatcgaattcgagtagggatcacactttagaatttagagagagaaactataga 352  Q
    ||||||||| | |||||||||||||||||||||  ||||||||||| |||||||||||||    
T  44762118 atgatacgacccaattcgagtagggatcacactccagaatttagagggagaaactataga 44762059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 294 - 387
Target Start/End: Complemental strand, 44765424 - 44765330
Alignment:
Q  294 tgatacgatcgaattcgagtagggatcacactttagaatttagagagagaaactatagacaatag-aaggaaattggttatattttttattgatt 387  Q
    |||||||| | ||||||||||||||| |||||  ||||||||||| ||||||||||||| || || ||| |||||  |||||||||| |||||||    
T  44765424 tgatacgacccaattcgagtagggattacactccagaatttagagggagaaactatagaaaagagaaagaaaattcattatatttttcattgatt 44765330  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 389
Target Start/End: Complemental strand, 31211964 - 31211867
Alignment:
Q  293 atgatacgatcgaattcgagtagggatcacactttag-aatttagagagagaaactatagacaatag-aaggaaattggttatattttttattgattct 389  Q
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T  31211964 atgatacgatccaattcgagtagggatcacactccagaaattaagagaga-aaactagagataaaagaaagaaaattcattatatttttcattgattct 31211867  T

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