View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14525_low_6 (Length: 404)
Name: NF14525_low_6
Description: NF14525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14525_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 19 - 395
Target Start/End: Original strand, 17834783 - 17835158
Alignment:
| Q |
19 |
gttatacctatgagacttttgtgagtcatattgttgtaactcaatagctttcatgtgtagccaacatatgatttcccatgagaggcaaatttgtccaaca |
118 |
Q |
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| T |
17834783 |
gttatacctatgagacctttgtgagtcatattgttgtaactcaatagctttcatgtgtagccaacataggatttcccatgaaaggcaaatttgtccaaca |
17834882 |
T |
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| Q |
119 |
tataccaattccaaatctctatgaagctgatgaacaagttttaaaaatgggtcagatgtgatctttgttgattttcttggccacaaattttgagaaatta |
218 |
Q |
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| T |
17834883 |
tataccaattccaaatctctatgaagctgatgaacaagttttaaaaatgggtcagatgtgatctttgttgattttcttggccacaaattttgagaaatta |
17834982 |
T |
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| Q |
219 |
ttccatttgagatggtggattttggtattgaaattaatttaagagggtcttttagttgaagaagacctacaaatcaagagtaaagtggaatgaattagtc |
318 |
Q |
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| T |
17834983 |
ttccatttgagatggtggattttggtattgaaattaatttaagagggtcttttagttgaagaagacctacaaatcaagagtaaagtggaatgaattagtc |
17835082 |
T |
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| Q |
319 |
ataataatcaaatggaaaacatgatcattaannnnnnnagtgctaaataaataagtttactttgcttagagtataat |
395 |
Q |
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| T |
17835083 |
ataataatcaaatggaaaacatgatcatt-atttgtttagtgctaaataaataagttcactttacttagagtataat |
17835158 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 135
Target Start/End: Complemental strand, 24216566 - 24216509
Alignment:
| Q |
78 |
gccaacatatgatttcccatgagaggcaaatttgtccaacatataccaattccaaatc |
135 |
Q |
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| T |
24216566 |
gccaacatagcatttcccaagagagacaaatttgtccaacataaacaagttccaaatc |
24216509 |
T |
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