View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14526_high_1 (Length: 421)

Name: NF14526_high_1
Description: NF14526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14526_high_1
NF14526_high_1
[»] chr4 (1 HSPs)
chr4 (122-414)||(26701350-26701642)


Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 122 - 414
Target Start/End: Complemental strand, 26701642 - 26701350
Alignment:
Q  122 ttatcattttctttttgaaagaccataacttatcatctattgttcaccttaattagtgcttccctttttctaagaatatatgattaattccaaatgcatg 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26701642 ttatcattttctttttgaaagaccataacttatcatctattgttcaccttaattagtgcttccctttttctaagaatatatgattaattccaaatgcatg 26701543  T
Q  222 tatagtacaagagggctagagaaggtttatccattcattgaattattatttttattatgattttatatgcaccaatattctcattttgtcaattccctca 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26701542 tatagtacaagagggctagagaaggtttatccattcattgaattattatttttattatgattttatatgcaccaatattctcattttgtcaattccctca 26701443  T
Q  322 ttgcatgcatagtatcatcttaatatatcaagtcataatcattgccttaatccgtttgatacccaccaaaatatttattgtccgttcattcat 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26701442 ttgcatgcatagtatcatcttaatatatcaagtcataatcattgccttaatccgtttgatacccaccaaaatatttattgtccgttcattcat 26701350  T

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