View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14526_high_11 (Length: 235)
Name: NF14526_high_11
Description: NF14526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14526_high_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 24 - 220
Target Start/End: Complemental strand, 38871614 - 38871418
Alignment:
| Q |
24 |
tccttaacccatgttttgttcttgaaatataatccgcctgtagggaatgccgactgtggaagcaagtacatatcaacctgtaatcgaaaaaatcaagaaa |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
38871614 |
tccttaacccatgttttgttcttgaaatataatccgcctgtagggaatgccgactgtggaagcaagtacatatcaacctgtaatcggaaaaatcaagaaa |
38871515 |
T |
|
| Q |
124 |
atgaaggatttaaattgaaggttataatggcatgcactttgttcattcatttattagaattcagaaacaatatcctataattgatctccagcctatg |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38871514 |
atgaaggatttaaattgaaggttataatggcatgcactttgttcattcatttattagaattcagaaacaatatcctataattgatctccagcctatg |
38871418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 113 - 193
Target Start/End: Complemental strand, 9819346 - 9819266
Alignment:
| Q |
113 |
aaatcaagaaaatgaaggatttaaattgaaggttataatggcatgcactttgttcattcatttattagaattcagaaacaa |
193 |
Q |
| |
|
|||| |||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
9819346 |
aaataaagaaaatgaaggatttaaatttaagcttataatggcatgcgctttgttcattcatttattagaattcagaaacaa |
9819266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University