View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14526_high_15 (Length: 207)

Name: NF14526_high_15

Description: NF14526

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF14526_high_15

[»] chr6 (2 HSPs)

Target: chr6 (Bit Score: 163; Significance: 3e-87; HSPs: 2)

Name: chr6

Description:

Target: chr6; HSP #1

Raw Score: 163; E-Value: 3e-87

Query Start/End: Original strand, 18 - 192

Target Start/End: Complemental strand, 10371228 - 10371055

Alignment:

Q	18	gaattttctattttaagcccttgatttttctgcaaaagttacagacagacaaaataaatctatctcgaattcttgtcactaaatttagagacagatgttt	117	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	10371228	gaattttctattttaagcccttgatttttctgcaaaagttacagacagacaaaataaatctatctcgaattcttgtcactaaatttagagacagatgttt	10371129	T

Q	118	tattttacaccattgattttaattaacagttaaattttctagtaattgttctacttgaaccctatttgaattcat	192	Q
		\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	10371128	tattttaca-cattgattttaattaacagttcaattttctagtaattgttctacttgaaccctatttgaattcat	10371055	T

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Target: chr6; HSP #2

Raw Score: 37; E-Value: 0.000000000005

Query Start/End: Original strand, 64 - 104

Target Start/End: Complemental strand, 10371274 - 10371234

Alignment:

Q	64	agacaaaataaatctatctcgaattcttgtcactaaattta	104	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	10371274	agacaaaataaatctatctcaaattcttgtcactaaattta	10371234	T

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