View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14526_high_2 (Length: 417)
Name: NF14526_high_2
Description: NF14526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14526_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 4 - 400
Target Start/End: Original strand, 50724280 - 50724675
Alignment:
| Q |
4 |
ttctgcatatgttgaataacaaggatcatagcccccaaaaattctcatcctcttcaatctataatcatttttcacctgtaatagccaaattttccctccc |
103 |
Q |
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| T |
50724280 |
ttctgcatatgttgaataacaaggatcatagcccccaaaaattctcatcctcttcaatctataatcatttttcacctgcaatagccaaattttccctccc |
50724379 |
T |
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| Q |
104 |
acttaaccatataccgtttcataaatgatattttgacacgcaaatttaacatcaaatttcgataacaaacttcaatatttaatgctcaaatactagttaa |
203 |
Q |
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| T |
50724380 |
acttaaccatataccgtttcataaatgatattttgacacgcaaatttaacatcaaatttcgataacaaacttcaatatttaatgctcaa-tactagttaa |
50724478 |
T |
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| Q |
204 |
tacagtgatatcatttaatttagaatctaaagatttgtgacaatagttatctaccttggaaaatgattcagggacattatttgttactgtcactgaggat |
303 |
Q |
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| T |
50724479 |
tacagtgatatcatttaatttagaatctaaagatttgtgacaatagttatctaccttggaaaatgattcagggacattatttgttactgtcactgaggat |
50724578 |
T |
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| Q |
304 |
gtactatttgaatgacatgatggtgcataaatgttgtatatatcaatttctgagtaatcatggaaaacttcactcatgacctgattgcactcattag |
400 |
Q |
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| T |
50724579 |
gtactatttgaatgacatgatggtgcataaatgttgtatatatcaatttctgagtaatcatggaaaacttcactcatgacctgattgcactcattag |
50724675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 50731651 - 50731728
Alignment:
| Q |
4 |
ttctgcatatgttgaataacaaggatcatagcccccaaaaattctcatcctcttcaatctataatcatttttcacctg |
81 |
Q |
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| T |
50731651 |
ttctgcatatatggaataacaagggtcatagcccccaaaacttctcatcctcttcattctataaccatttttcacctg |
50731728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 300 - 368
Target Start/End: Original strand, 50731876 - 50731944
Alignment:
| Q |
300 |
ggatgtactatttgaatgacatgatggtgcataaatgttgtatatatcaatttctgagtaatcatggaa |
368 |
Q |
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| T |
50731876 |
ggatgtactatttaaacgacatgcaggggcataaatgttgaatatgtcaatttctgaataatcatggaa |
50731944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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