View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14526_high_7 (Length: 297)
Name: NF14526_high_7
Description: NF14526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14526_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 12 - 281
Target Start/End: Original strand, 35264470 - 35264739
Alignment:
| Q |
12 |
atgaacatgtgtagagacaacaagtcttcaaataagaactgcatctttagttgtaaagcaacaaacaaattggtcagatatttnnnnnnnttggtaaaat |
111 |
Q |
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| T |
35264470 |
atgaacatgtgtagagacaacaagtcttcaaataagaactgcatctttagttgtaaagtaacaaacaaattggtcagatatttaaaaaaattggtaaaat |
35264569 |
T |
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| Q |
112 |
gatgcattcaaaaagaaataggttcggttgccgcagcaaataggatgnnnnnnnggaagtctgcagaggaagcaaaaaccacagcgttacagaagaagga |
211 |
Q |
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| T |
35264570 |
gatgcattcaaaaagaaataggttcggttgccgcagcaaataggatgaaaaaaaggaagtctgcagaggaagcaaaaaccacagcgttacagaagaagga |
35264669 |
T |
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| Q |
212 |
tcttggtgctccaagctgaagttggatgcaaaagatagttgagtgaagagcagggttatgtgttgctgat |
281 |
Q |
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| T |
35264670 |
tcttggtgctccaagctgaagttggatgcaaaagatagttgagtgaagagcagggttatgtgttgctgat |
35264739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 216
Target Start/End: Original strand, 35271802 - 35272004
Alignment:
| Q |
14 |
gaacatgtgtagagacaacaagtcttcaaataagaactgcatctttagttgtaaagcaacaaacaaattggtcagatatttnnnnnnnttggtaaaatga |
113 |
Q |
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| T |
35271802 |
gaacatgtgtagaaataacaagtcttaaaataagaactatagctttagttgtaaagtaacaaacaaattggtctaatatttaaaaaatttggtaaaatga |
35271901 |
T |
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| Q |
114 |
tgcattcaaaaagaaataggttcggttgccgcagcaaataggatgnnnnnnnggaagtctgcagaggaagcaaaaaccacagcgttacagaagaaggatc |
213 |
Q |
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| T |
35271902 |
tgcattcaaaaatatataggttccgttgccaaagcaattaggatcaaaaaaggaaagtctgcagattaagcaaaaactgcagcgctacagaagaaggatc |
35272001 |
T |
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| Q |
214 |
ttg |
216 |
Q |
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||| |
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| T |
35272002 |
ttg |
35272004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 204 - 281
Target Start/End: Original strand, 35272032 - 35272109
Alignment:
| Q |
204 |
aagaaggatcttggtgctccaagctgaagttggatgcaaaagatagttgagtgaagagcagggttatgtgttgctgat |
281 |
Q |
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|||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||| | |||||||||||||| |
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| T |
35272032 |
aagaaggatcttgggtctccaagctgaacttggatgcaaaagatagttgggtgaagagcactgatatgtgttgctgat |
35272109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 82
Target Start/End: Original strand, 35148463 - 35148504
Alignment:
| Q |
41 |
aaataagaactgcatctttagttgtaaagcaacaaacaaatt |
82 |
Q |
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| T |
35148463 |
aaataggaactgcgtctttagttgtaaggcaacaaacaaatt |
35148504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 12 - 281
Target Start/End: Original strand, 36778252 - 36778521
Alignment:
| Q |
12 |
atgaacatgtgtagagacaacaagtcttcaaataagaactgcatctttagttgtaaagcaacaaacaaattggtcagatatttnnnnnnnttggtaaaat |
111 |
Q |
| |
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|||||||| |||||| | |||||||||| |||||||||| || |||||||||||||| |||||||||||||||| ||||||| |||||||||| |
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| T |
36778252 |
atgaacatatgtagaaataacaagtcttaaaataagaaccacagctttagttgtaaagtaacaaacaaattggtctgatatttaaaaaatttggtaaaat |
36778351 |
T |
|
| Q |
112 |
gatgcattcaaaaagaaataggttcggttgccgcagcaaataggatgnnnnnnnggaagtctgcagaggaagcaaaaaccacagcgttacagaagaagga |
211 |
Q |
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|||||||||||||| |||||||| ||||| || |||||| |||||| | ||||||||||| ||||||||| | || || ||||||||||||| |
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| T |
36778352 |
gatgcattcaaaaataaataggtacggttaccacagcaattaggatcaaaaaaggaaagtctgcagatgaagcaaaagctgcaacgctacagaagaagga |
36778451 |
T |
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| Q |
212 |
tcttggtgctccaagctgaagttggatgcaaaagatagttgagtgaagagcagggttatgtgttgctgat |
281 |
Q |
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|| ||| ||||||||||||| |||||||||||||||||||| |||||||||| || |||||||| ||||| |
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| T |
36778452 |
tcctggggctccaagctgaacttggatgcaaaagatagttgggtgaagagcatggatatgtgtttctgat |
36778521 |
T |
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