View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14526_high_9 (Length: 246)

Name: NF14526_high_9
Description: NF14526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14526_high_9
NF14526_high_9
[»] chr7 (11 HSPs)
chr7 (1-243)||(24596075-24596322)
chr7 (30-154)||(48433687-48433812)
chr7 (29-155)||(23824568-23824694)
chr7 (60-154)||(4956069-4956164)
chr7 (99-154)||(28914854-28914909)
chr7 (60-154)||(27454034-27454130)
chr7 (99-154)||(3961385-3961440)
chr7 (29-138)||(40273813-40273923)
chr7 (100-154)||(42841758-42841812)
chr7 (100-149)||(43440753-43440802)
chr7 (110-154)||(26455982-26456026)
[»] chr5 (11 HSPs)
chr5 (60-154)||(5039703-5039798)
chr5 (177-236)||(26366391-26366450)
chr5 (29-154)||(38503234-38503360)
chr5 (99-155)||(1572173-1572229)
chr5 (100-154)||(930915-930969)
chr5 (69-154)||(42208949-42209034)
chr5 (100-155)||(26671646-26671702)
chr5 (100-155)||(26943243-26943299)
chr5 (31-154)||(31250141-31250265)
chr5 (60-154)||(33545364-33545458)
chr5 (60-144)||(43227889-43227974)
[»] chr4 (7 HSPs)
chr4 (177-236)||(46097458-46097517)
chr4 (99-154)||(46283185-46283240)
chr4 (60-136)||(22096386-22096463)
chr4 (30-154)||(50815700-50815825)
chr4 (74-154)||(11491196-11491277)
chr4 (101-154)||(16556516-16556569)
chr4 (99-155)||(37889582-37889638)
[»] chr3 (13 HSPs)
chr3 (60-154)||(44062019-44062113)
chr3 (70-154)||(29645804-29645889)
chr3 (99-154)||(985896-985951)
chr3 (29-154)||(11483605-11483731)
chr3 (60-154)||(27817045-27817139)
chr3 (100-154)||(38668192-38668246)
chr3 (99-154)||(27471567-27471622)
chr3 (99-154)||(31435478-31435533)
chr3 (99-154)||(39739337-39739392)
chr3 (99-154)||(47864699-47864754)
chr3 (100-154)||(33528182-33528236)
chr3 (30-83)||(1084077-1084130)
chr3 (99-150)||(10959196-10959245)
[»] chr6 (5 HSPs)
chr6 (28-154)||(6228237-6228364)
chr6 (69-154)||(18903344-18903430)
chr6 (70-154)||(17216991-17217076)
chr6 (125-154)||(1128393-1128422)
chr6 (98-138)||(11611431-11611471)
[»] chr2 (4 HSPs)
chr2 (60-154)||(34107518-34107612)
chr2 (60-154)||(17543067-17543162)
chr2 (109-154)||(18949662-18949706)
chr2 (69-152)||(18424131-18424215)
[»] chr1 (13 HSPs)
chr1 (29-154)||(12973255-12973381)
chr1 (30-154)||(15417794-15417919)
chr1 (99-154)||(7438684-7438739)
chr1 (60-154)||(12148550-12148645)
chr1 (74-154)||(29936658-29936739)
chr1 (30-154)||(49619965-49620090)
chr1 (31-154)||(24134601-24134725)
chr1 (33-154)||(48497190-48497312)
chr1 (101-154)||(3347680-3347733)
chr1 (101-154)||(10123030-10123083)
chr1 (70-154)||(25031474-25031559)
chr1 (30-154)||(34702290-34702415)
chr1 (60-144)||(50065033-50065118)
[»] scaffold0001 (1 HSPs)
scaffold0001 (30-154)||(419705-419830)
[»] chr8 (9 HSPs)
chr8 (29-138)||(41454820-41454930)
chr8 (74-154)||(45536755-45536836)
chr8 (101-153)||(27102310-27102362)
chr8 (99-154)||(1360112-1360166)
chr8 (60-154)||(4259882-4259977)
chr8 (110-152)||(279976-280018)
chr8 (110-152)||(635834-635876)
chr8 (110-152)||(821637-821679)
chr8 (101-154)||(43413863-43413916)


Alignment Details
Target: chr7 (Bit Score: 126; Significance: 4e-65; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 24596075 - 24596322
Alignment:
Q  1 cctatatgttcaaactatttcgtacctctgtccccatgagtttagcttatttattacatgataatgtgcaatatgtgcaggggccgaagttcaaa-cttg 99  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||  ||||||| |||     
T  24596075 cctatatgttcaaactattttgtacctctctccccatgagtttagctcatttattacatgataatatgcaatatgtgcaggagccggggttcaaaccttt 24596174  T
Q  100 gaca-ccccccttattcattttaaatgtgaatttctctagtcactagactacttgatc---nnnnnnnnttatttagcacctctcaacacgttaaaacct 195  Q
    |||| |||||||||||||||| ||| |||||||||||||| |||| | ||||||||||            ||||||||||||||||||||||||||||||    
T  24596175 gacacccccccttattcatttcaaaggtgaatttctctagccactgggctacttgatcaaaaaaaaaaaatatttagcacctctcaacacgttaaaacct 24596274  T
Q  196 tttgtgcgtcttctcatcctttcactgtttgtcttcatcttcttctca 243  Q
    | ||||||||||||||||||||||||||||| ||||||||| ||||||    
T  24596275 tctgtgcgtcttctcatcctttcactgtttggcttcatctttttctca 24596322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 154
Target Start/End: Complemental strand, 48433812 - 48433687
Alignment:
Q  30 gtccccatgagtttagcttatttattacatgataatgtgcaatatgtgcaggggccgaagttcaaactt-ggacaccccccttattcattttaaatgtga 128  Q
    ||||||||||| |||||| ||||  ||   |||||||  ||||||||||||||||||  ||||||||   ||||||||| ||||||||| || || ||||    
T  48433812 gtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcaaaccccggacaccccacttattcatctttaaggtga 48433713  T
Q  129 atttctctagtcactagactacttga 154  Q
    |||||||||| |||||| ||||||||    
T  48433712 atttctctagccactaggctacttga 48433687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 155
Target Start/End: Complemental strand, 23824694 - 23824568
Alignment:
Q  29 tgtccccatgagtttagcttatttattacatgataatgtgcaatatgtgcaggggccgaagttcaaacttggacaccccccttattcattttaaatgtga 128  Q
    |||||||||||| |||||| ||||  ||   |||||||  ||||||||||| ||||||| |||| |||  ||||||||  ||||||||| || || ||||    
T  23824694 tgtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcatgggccgaggttcgaacccggacaccctacttattcatctttaaggtga 23824595  T
Q  129 atttctctagtcactagactacttgat 155  Q
    |||||||||| ||||||  ||||||||    
T  23824594 atttctctagccactaggttacttgat 23824568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 154
Target Start/End: Complemental strand, 4956164 - 4956069
Alignment:
Q  60 gataatgtgcaatatgtgcaggggccgaagttcaaact-tggacaccccccttattcattttaaatgtgaatttctctagtcactagactacttga 154  Q
    |||||||  ||||||||||||||| ||  |||| |||  |||||||||| ||||||||| || || |||||||||||||| |||||| ||||||||    
T  4956164 gataatgcacaatatgtgcaggggtcggggttcgaaccctggacaccccacttattcatctttaaggtgaatttctctagccactaggctacttga 4956069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 154
Target Start/End: Complemental strand, 28914909 - 28914854
Alignment:
Q  99 ggacaccccccttattcattttaaatgtgaatttctctagtcactagactacttga 154  Q
    ||||||||| |||||||| |||||| |||||||||||||| |||||| ||||||||    
T  28914909 ggacaccccacttattcactttaaaggtgaatttctctagccactaggctacttga 28914854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 154
Target Start/End: Original strand, 27454034 - 27454130
Alignment:
Q  60 gataatgtgcaatatgtgcaggggccgaagttcaaactt-ggacaccccccttattcattttaaatg-tgaatttctctagtcactagactacttga 154  Q
    |||||||  |||| |||||||||| ||| |||| ||| | ||||||||| ||||||||| ||||| | ||||||||||||| |||||| ||||||||    
T  27454034 gataatgcacaatttgtgcaggggtcgaggttcgaacctcggacaccccacttattcatcttaaaaggtgaatttctctagccactaggctacttga 27454130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 154
Target Start/End: Complemental strand, 3961440 - 3961385
Alignment:
Q  99 ggacaccccccttattcattttaaatgtgaatttctctagtcactagactacttga 154  Q
    ||||| ||| ||||||||||||||| ||||||||||||||  ||||| ||||||||    
T  3961440 ggacatcccacttattcattttaaaggtgaatttctctagctactaggctacttga 3961385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 138
Target Start/End: Original strand, 40273813 - 40273923
Alignment:
Q  29 tgtccccatgagtttagcttatttattacatgataatgtgcaatatgtgcaggggccgaagttcaaactt-ggacaccccccttattcattttaaatgtg 127  Q
    |||||||||||| |||||| ||||  ||   |||||||  ||||||||||||||||||  |||| |||   ||||||||| ||||||||| || || |||    
T  40273813 tgtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcgaaccccggacaccccacttattcatctttaaggtg 40273912  T
Q  128 aatttctctag 138  Q
    |||||||||||    
T  40273913 aatttctctag 40273923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 154
Target Start/End: Complemental strand, 42841812 - 42841758
Alignment:
Q  100 gacaccccccttattcattttaaatgtgaatttctctagtcactagactacttga 154  Q
    |||||||| ||||||||| ||||| |||||||||||||| ||||  |||||||||    
T  42841812 gacaccccacttattcatcttaaaggtgaatttctctagacactgaactacttga 42841758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 149
Target Start/End: Original strand, 43440753 - 43440802
Alignment:
Q  100 gacaccccccttattcattttaaatgtgaatttctctagtcactagacta 149  Q
    |||||||| ||||||||| || || |||||||||||||| ||||||||||    
T  43440753 gacaccccacttattcatctttaaggtgaatttctctagccactagacta 43440802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 154
Target Start/End: Complemental strand, 26456026 - 26455982
Alignment:
Q  110 ttattcattttaaatgtgaatttctctagtcactagactacttga 154  Q
    |||||||  ||||| |||||||||||||| |||||||||||||||    
T  26456026 ttattcaccttaaaggtgaatttctctagccactagactacttga 26455982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 60 - 154
Target Start/End: Original strand, 5039703 - 5039798
Alignment:
Q  60 gataatgtgcaatatgtgcaggggccgaagttcaaactt-ggacaccccccttattcattttaaatgtgaatttctctagtcactagactacttga 154  Q
    |||||||| ||||||||||| ||||||  |||| ||||| ||||||||| ||||||||| || || || ||||||||||| |||||||||||||||    
T  5039703 gataatgtacaatatgtgcaagggccggggttcgaacttcggacaccccacttattcatctttaaggtaaatttctctagccactagactacttga 5039798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 177 - 236
Target Start/End: Original strand, 26366391 - 26366450
Alignment:
Q  177 tctcaacacgttaaaaccttttgtgcgtcttctcatcctttcactgtttgtcttcatctt 236  Q
    |||||||||||||||| |||||||| ||||||||||||| ||||||||||||||| ||||    
T  26366391 tctcaacacgttaaaatcttttgtgtgtcttctcatcctatcactgtttgtcttcctctt 26366450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 154
Target Start/End: Complemental strand, 38503360 - 38503234
Alignment:
Q  29 tgtccccatgagtttagcttatttattacatgataatgtgcaatatgtgcaggggccgaagttcaaactt-ggacaccccccttattcattttaaatgtg 127  Q
    |||||||||||| |||||| ||||  ||   |||||||  ||||||||||||||||||  |||| |||   ||||||||| ||||||||| || || |||    
T  38503360 tgtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcgaaccccggacaccccacttattcatctttaaggtg 38503261  T
Q  128 aatttctctagtcactagactacttga 154  Q
    ||||||||||| || ||||||||||||    
T  38503260 aatttctctagccaatagactacttga 38503234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 155
Target Start/End: Original strand, 1572173 - 1572229
Alignment:
Q  99 ggacaccccccttattcattttaaatgtgaatttctctagtcactagactacttgat 155  Q
    |||| |||| ||||||||| ||||| |||||||||||||| ||||||||||||||||    
T  1572173 ggactccccacttattcatcttaaaggtgaatttctctagccactagactacttgat 1572229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 100 - 154
Target Start/End: Complemental strand, 930969 - 930915
Alignment:
Q  100 gacaccccccttattcattttaaatgtgaatttctctagtcactagactacttga 154  Q
    |||| ||| ||||||||| ||||| |||||||||||||||||||| |||||||||    
T  930969 gacatcccacttattcatcttaaaggtgaatttctctagtcactaaactacttga 930915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 69 - 154
Target Start/End: Original strand, 42208949 - 42209034
Alignment:
Q  69 caatatgtgcaggggccgaagttcaaactt-ggacaccccccttattcattttaaatgtgaatttctctagtcactagactacttga 154  Q
    |||||||||||||| |||| |||| ||||  ||||||| | ||||||||| || || ||||||||||||||||||||| ||||||||    
T  42208949 caatatgtgcaggg-ccgaggttcgaactccggacacctcacttattcatctttaaggtgaatttctctagtcactaggctacttga 42209034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 155
Target Start/End: Original strand, 26671646 - 26671702
Alignment:
Q  100 gacaccccccttattcattttaaatg-tgaatttctctagtcactagactacttgat 155  Q
    |||||||| ||||||||| ||||| | ||||||||||||| ||||||||||||||||    
T  26671646 gacaccccacttattcatcttaaaaggtgaatttctctagccactagactacttgat 26671702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 155
Target Start/End: Original strand, 26943243 - 26943299
Alignment:
Q  100 gacaccccccttattcattttaaatg-tgaatttctctagtcactagactacttgat 155  Q
    |||||||| ||||||||| ||||| | ||||||||||||| ||||||||||||||||    
T  26943243 gacaccccacttattcatcttaaaaggtgaatttctctagccactagactacttgat 26943299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 154
Target Start/End: Original strand, 31250141 - 31250265
Alignment:
Q  31 tccccatgagtttagcttatttattacatgataatgtgcaatatgtgcaggggccgaagttcaaactt-ggacaccccccttattcattttaaatgtgaa 129  Q
    |||||||||| |||||| ||||  ||   |||||||  ||||||||||||||||||  |||| |||   ||||||||| ||||||||| || || |||||    
T  31250141 tccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcgaaccccggacaccccacttattcatctttaaggtgaa 31250240  T
Q  130 tttctctagtcactagactacttga 154  Q
    ||||||||| |||||| || |||||    
T  31250241 tttctctagccactaggctgcttga 31250265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 154
Target Start/End: Complemental strand, 33545458 - 33545364
Alignment:
Q  60 gataatgtgcaatatgtgcaggggccgaagttcaaactt-ggacaccccccttattcattttaaatgtgaatttctctagtcactagactacttga 154  Q
    |||||||  ||||||||||||||| || ||||  ||| | |||||||||| |||||||| || || |||||||||||||| |||||| ||||||||    
T  33545458 gataatgcacaatatgtgcaggggtcggagtttgaacctcggacaccccc-ttattcatctttaaggtgaatttctctagccactaggctacttga 33545364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 144
Target Start/End: Original strand, 43227889 - 43227974
Alignment:
Q  60 gataatgtgcaatatgtgcaggggccgaagttcaaactt-ggacaccccccttattcattttaaatgtgaatttctctagtcacta 144  Q
    |||||||  ||||||||||||||||||  |||| |||   ||||||||| ||||||||| || || |||||||||||||| |||||    
T  43227889 gataatgcacaatatgtgcaggggccggggttcgaaccccggacaccccacttattcatctttaaggtgaatttctctagccacta 43227974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 177 - 236
Target Start/End: Complemental strand, 46097517 - 46097458
Alignment:
Q  177 tctcaacacgttaaaaccttttgtgcgtcttctcatcctttcactgtttgtcttcatctt 236  Q
    |||||||||||||||| |||||||| ||||||||||||| ||||||||||||||| ||||    
T  46097517 tctcaacacgttaaaatcttttgtgtgtcttctcatcctatcactgtttgtcttcctctt 46097458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 99 - 154
Target Start/End: Original strand, 46283185 - 46283240
Alignment:
Q  99 ggacaccccccttattcattttaaatgtgaatttctctagtcactagactacttga 154  Q
    ||||||||| ||||||||| || || ||||||||||||||||||||||||||||||    
T  46283185 ggacaccccacttattcatctttaaggtgaatttctctagtcactagactacttga 46283240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 136
Target Start/End: Complemental strand, 22096463 - 22096386
Alignment:
Q  60 gataatgtgcaatatgtgcaggggccgaagttcaaactt-ggacaccccccttattcattttaaatgtgaatttctct 136  Q
    |||||||  ||||||||||||||||||| |||| ||||  ||||||||| |||||||||||| || ||||||||||||    
T  22096463 gataatgcacaatatgtgcaggggccgaggttcgaactccggacaccccacttattcatttttaaggtgaatttctct 22096386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 154
Target Start/End: Original strand, 50815700 - 50815825
Alignment:
Q  30 gtccccatgagtttagcttatttattacatgataatgtgcaatatgtgcaggggccgaagttcaaactt-ggacaccccccttattcattttaaatgtga 128  Q
    ||||||||||| |||||| ||||  || | |||||||  |||| |||||||||||||  |||| |||   ||||||||| | ||||||| ||||| ||||    
T  50815700 gtccccatgagcttagctcatttgataaaggataatgcacaatttgtgcaggggccggggttcgaaccccggacaccccacatattcatcttaaaggtga 50815799  T
Q  129 atttctctagtcactagactacttga 154  Q
    |||||||||| |||||| ||||||||    
T  50815800 atttctctagccactaggctacttga 50815825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 11491277 - 11491196
Alignment:
Q  74 tgtgcaggggccgaagttcaaactt-ggacaccccccttattcattttaaatgtgaatttctctagtcactagactacttga 154  Q
    ||||||||||||| ||||| |||   ||||||||| ||||||||| || || |||||||||||||| |||||| ||||||||    
T  11491277 tgtgcaggggccggagttcgaaccccggacaccccacttattcatctttaaggtgaatttctctagccactaggctacttga 11491196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 154
Target Start/End: Original strand, 16556516 - 16556569
Alignment:
Q  101 acaccccccttattcattttaaatgtgaatttctctagtcactagactacttga 154  Q
    ||||||| ||||||||| || || |||||||||||||| |||||| ||||||||    
T  16556516 acaccccacttattcatctttaaggtgaatttctctagccactaggctacttga 16556569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 155
Target Start/End: Complemental strand, 37889638 - 37889582
Alignment:
Q  99 ggacaccccccttattcattttaaatgtgaatttctctagtcactagactacttgat 155  Q
    ||||||| | |||||||| ||| || |||||||||||||| |||||| |||||||||    
T  37889638 ggacacctcacttattcacttttaaggtgaatttctctagccactaggctacttgat 37889582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 60 - 154
Target Start/End: Complemental strand, 44062113 - 44062019
Alignment:
Q  60 gataatgtgcaatatgtgcaggggccgaagttcaaacttggacaccccccttattcattttaaatgtgaatttctctagtcactagactacttga 154  Q
    |||||||  |||||||||||||||||| ||||| |||   |||||||| ||||||||| || || |||||| ||||||| |||||||||||||||    
T  44062113 gataatgcacaatatgtgcaggggccggagttcgaaccccgacaccccacttattcatctttaaggtgaatgtctctagccactagactacttga 44062019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 154
Target Start/End: Complemental strand, 29645889 - 29645804
Alignment:
Q  70 aatatgtgcaggggccgaagttcaaactt-ggacaccccccttattcattttaaatgtgaatttctctagtcactagactacttga 154  Q
    |||||||||||||||||  |||| |||   ||||||||| ||||||||| || || |||||||||||||| |||||||||||||||    
T  29645889 aatatgtgcaggggccggggttcgaaccccggacaccccacttattcatctttaaggtgaatttctctagccactagactacttga 29645804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 154
Target Start/End: Complemental strand, 985951 - 985896
Alignment:
Q  99 ggacaccccccttattcattttaaatgtgaatttctctagtcactagactacttga 154  Q
    ||||||||| ||||||||| ||||| |||||||||||||| ||||||| |||||||    
T  985951 ggacaccccacttattcatcttaaaggtgaatttctctagccactagattacttga 985896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 154
Target Start/End: Original strand, 11483605 - 11483731
Alignment:
Q  29 tgtccccatgagtttagcttatttattacatgataatgtgcaatatgtgcaggggccgaagttcaaactt-ggacaccccccttattcattttaaatgtg 127  Q
    |||||||||||| |||||| ||||  ||   |||||||   ||||||||||||||||   |||| ||||  ||||||||| ||||||||| || || |||    
T  11483605 tgtccccatgagcttagctcatttggtaagggataatgcaaaatatgtgcaggggccagggttcgaactccggacaccccacttattcatctttaaggtg 11483704  T
Q  128 aatttctctagtcactagactacttga 154  Q
    |||||||||||  ||||||||||||||    
T  11483705 aatttctctagcaactagactacttga 11483731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 60 - 154
Target Start/End: Complemental strand, 27817139 - 27817045
Alignment:
Q  60 gataatgtgcaatatgtgcaggggccgaagttcaaacttggacaccccccttattcattttaaatgtgaatttctctagtcactagactacttga 154  Q
    |||||||  |||| ||||||||||||| ||||| |||  |||||||||  |||||||| || ||  ||||||||||||| |||||| ||||||||    
T  27817139 gataatgcacaatttgtgcaggggccggagttcgaacccggacaccccatttattcatctttaagttgaatttctctagccactaggctacttga 27817045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 100 - 154
Target Start/End: Original strand, 38668192 - 38668246
Alignment:
Q  100 gacaccccccttattcattttaaatgtgaatttctctagtcactagactacttga 154  Q
    |||||||| ||||||||| || || |||||||||||||| |||||||||||||||    
T  38668192 gacaccccacttattcatctttaaggtgaatttctctagccactagactacttga 38668246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 154
Target Start/End: Original strand, 27471567 - 27471622
Alignment:
Q  99 ggacaccccccttattcattttaaatgtgaatttctctagtcactagactacttga 154  Q
    ||||||||| ||||||||| || || || ||||||||||| |||||||||||||||    
T  27471567 ggacaccccacttattcatctttaaggtaaatttctctagccactagactacttga 27471622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 154
Target Start/End: Complemental strand, 31435533 - 31435478
Alignment:
Q  99 ggacaccccccttattcattttaaatgtgaatttctctagtcactagactacttga 154  Q
    ||||| ||| ||||||||| || || |||||||||||||| |||||||||||||||    
T  31435533 ggacatcccacttattcatctttaaggtgaatttctctagccactagactacttga 31435478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 154
Target Start/End: Original strand, 39739337 - 39739392
Alignment:
Q  99 ggacaccccccttattcattttaaatgtgaatttctctagtcactagactacttga 154  Q
    ||||||| | ||||||||| || || |||||||||||||| |||||||||||||||    
T  39739337 ggacacctcacttattcatctttaaggtgaatttctctagccactagactacttga 39739392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 154
Target Start/End: Original strand, 47864699 - 47864754
Alignment:
Q  99 ggacaccccccttattcattttaaatgtgaatttctctagtcactagactacttga 154  Q
    ||||||||| ||||||||| || || |||||||||||||| |||||| ||||||||    
T  47864699 ggacaccccacttattcatctttaaggtgaatttctctagccactaggctacttga 47864754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 154
Target Start/End: Complemental strand, 33528236 - 33528182
Alignment:
Q  100 gacaccccccttattcattttaaatgtgaatttctctagtcactagactacttga 154  Q
    |||||||| ||||||||| || || |||||||||||||| |||||| ||||||||    
T  33528236 gacaccccacttattcatctttaaggtgaatttctctagccactaggctacttga 33528182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 1084130 - 1084077
Alignment:
Q  30 gtccccatgagtttagcttatttattacatgataatgtgcaatatgtgcagggg 83  Q
    ||||||||||| |||||| |||| ||| | |||||||| |||||||||||||||    
T  1084130 gtccccatgagcttagctcatttgttaaaggataatgtacaatatgtgcagggg 1084077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 150
Target Start/End: Original strand, 10959196 - 10959245
Alignment:
Q  99 ggacaccccccttattcattttaaatgtgaatttctctagtcactagactac 150  Q
    ||||||||| |||||||| |||||| ||||||||||  ||||||||||||||    
T  10959196 ggacaccccacttattcactttaaaagtgaatttct--agtcactagactac 10959245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 28 - 154
Target Start/End: Complemental strand, 6228364 - 6228237
Alignment:
Q  28 ctgtccccatgagtttagcttatttattacatgataatgtgcaatatgtgcaggggccgaagttcaaactt-ggacaccccccttattcattttaaatgt 126  Q
    ||||||||||||| |||||| ||||  ||   |||||||  ||||||||||||||||||  |||| |||   ||||||||| ||||||||| || || ||    
T  6228364 ctgtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcgaaccccggacaccccacttattcatctttaaggt 6228265  T
Q  127 gaatttctctagtcactagactacttga 154  Q
    |||||||||||| |||||| ||||||||    
T  6228264 gaatttctctagccactaggctacttga 6228237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 69 - 154
Target Start/End: Complemental strand, 18903430 - 18903344
Alignment:
Q  69 caatatgtgcaggggccgaagttcaaactt-ggacaccccccttattcattttaaatgtgaatttctctagtcactagactacttga 154  Q
    ||||||||||||||||||  |||| |||   ||||||||| ||||||||| || || |||||||||||||| |||||| ||||||||    
T  18903430 caatatgtgcaggggccggggttcgaaccccggacaccccacttattcatctttaaggtgaatttctctagccactaggctacttga 18903344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 154
Target Start/End: Original strand, 17216991 - 17217076
Alignment:
Q  70 aatatgtgcaggggccgaagttcaaactt-ggacaccccccttattcattttaaatgtgaatttctctagtcactagactacttga 154  Q
    |||||||| ||||| || ||||| ||||  ||||||||| ||||||||| || || |||||||||||||| |||||| ||||||||    
T  17216991 aatatgtgtaggggtcggagttcgaactccggacaccccacttattcatctttaaggtgaatttctctagccactaggctacttga 17217076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 154
Target Start/End: Complemental strand, 1128422 - 1128393
Alignment:
Q  125 gtgaatttctctagtcactagactacttga 154  Q
    ||||||||||||||||||||||||||||||    
T  1128422 gtgaatttctctagtcactagactacttga 1128393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 11611431 - 11611471
Alignment:
Q  98 tggacaccccccttattcattttaaatgtgaatttctctag 138  Q
    |||||||||| ||||||||| || |||||||||||||||||    
T  11611431 tggacaccccacttattcatctttaatgtgaatttctctag 11611471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 154
Target Start/End: Original strand, 34107518 - 34107612
Alignment:
Q  60 gataatgtgcaatatgtgcaggggccgaagttcaaacttggacaccccccttattcattttaaatgtgaatttctctagtcactagactacttga 154  Q
    |||||||  ||||||||||||||| |   ||||||||  ||||||||| ||||||||| || || |||||||||||||| |||||| ||||||||    
T  34107518 gataatgcacaatatgtgcaggggtcagggttcaaacccggacaccccacttattcatctttaaggtgaatttctctagccactaggctacttga 34107612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 154
Target Start/End: Complemental strand, 17543162 - 17543067
Alignment:
Q  60 gataatgtgcaatatgtgcaggggccgaagttcaaac-ttggacaccccccttattcattttaaatgtgaatttctctagtcactagactacttga 154  Q
    |||||||  |||||||||||||||||| ||||| |||   ||||||||| ||||||||| || ||||||| ||||||||  |||||| ||||||||    
T  17543162 gataatgcacaatatgtgcaggggccggagttcgaacgccggacaccccacttattcatctttaatgtgactttctctaaccactaggctacttga 17543067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 18949706 - 18949662
Alignment:
Q  109 cttattcattttaaatgtgaatttctctagtcactagactacttga 154  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||    
T  18949706 cttattcattttaa-tgtgaatttctctagccactagactacttga 18949662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 152
Target Start/End: Complemental strand, 18424215 - 18424131
Alignment:
Q  69 caatatgtgcaggggccgaagttcaaactt-ggacaccccccttattcattttaaatgtgaatttctctagtcactagactactt 152  Q
    ||||||||||||||||||  |||| ||||  ||||| ||| ||||||||| || || |||||||||||||| |||||| ||||||    
T  18424215 caatatgtgcaggggccggggttcgaactccggacatcccacttattcatctttaaggtgaatttctctagccactaggctactt 18424131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 154
Target Start/End: Complemental strand, 12973381 - 12973255
Alignment:
Q  29 tgtccccatgagtttagcttatttattacatgataatgtgcaatatgtgcaggggccgaagttcaaacttg-gacaccccccttattcattttaaatgtg 127  Q
    ||||||||||||||||||| ||||  ||   |||||||  |||||| ||||||||||||  ||||||||   |||||||| ||||||||| || || ||     
T  12973381 tgtccccatgagtttagctcatttggtaagggataatgcacaatatatgcaggggccgagattcaaactcctgacaccccacttattcatctttaaggta 12973282  T
Q  128 aatttctctagtcactagactacttga 154  Q
    ||||||| ||| |||||||||||||||    
T  12973281 aatttctttagccactagactacttga 12973255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 154
Target Start/End: Complemental strand, 15417919 - 15417794
Alignment:
Q  30 gtccccatgagtttagcttatttattacatgataatgtgcaatatgtgcaggggccgaagttcaaa-cttggacaccccccttattcattttaaatgtga 128  Q
    ||||||||||| |||||| ||||  || | |||||||  ||||||||| |||||| |  |||| || || ||||||||| ||||||||| || ||  |||    
T  15417919 gtccccatgagcttagctcatttggtaaaggataatgcacaatatgtgtaggggctggggttcgaagctcggacaccccacttattcatctttaagatga 15417820  T
Q  129 atttctctagtcactagactacttga 154  Q
    ||||||||||||||||| ||||||||    
T  15417819 atttctctagtcactaggctacttga 15417794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 154
Target Start/End: Original strand, 7438684 - 7438739
Alignment:
Q  99 ggacaccccccttattcattttaaatgtgaatttctctagtcactagactacttga 154  Q
    ||||||||| ||||||||| ||||| |||||||||| ||| |||||||||||||||    
T  7438684 ggacaccccacttattcatcttaaaggtgaatttctttagccactagactacttga 7438739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 154
Target Start/End: Complemental strand, 12148645 - 12148550
Alignment:
Q  60 gataatgtgcaatatgtgcaggggccgaagttcaaacttg-gacaccccccttattcattttaaatgtgaatttctctagtcactagactacttga 154  Q
    |||||||| ||||||||||||||| || |||||||||    |||||||| ||||||||| || || |||||||||||| | ||||||||| |||||    
T  12148645 gataatgtacaatatgtgcaggggtcggagttcaaaccccagacaccccacttattcatctttaaggtgaatttctctggacactagactgcttga 12148550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 29936739 - 29936658
Alignment:
Q  74 tgtgcaggggccgaagttcaaactt-ggacaccccccttattcattttaaatgtgaatttctctagtcactagactacttga 154  Q
    |||||||||| || ||||| ||||  ||||||||| ||||||||| ||||| |||||||||||||| || ||| ||||||||    
T  29936739 tgtgcaggggtcggagttcgaactccggacaccccacttattcatcttaaaagtgaatttctctagccattaggctacttga 29936658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 154
Target Start/End: Original strand, 49619965 - 49620090
Alignment:
Q  30 gtccccatgagtttagcttatttattacatgataatgtgcaatatgtgcaggggccgaagttcaaactt-ggacaccccccttattcattttaaatgtga 128  Q
    ||||||||||| |||||| ||||  ||   |||||||  ||||||||||||||| ||  ||||| ||   ||||||||| ||||||||| || || ||||    
T  49619965 gtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggtcggggttcagaccccggacaccccacttattcatctttaaagtga 49620064  T
Q  129 atttctctagtcactagactacttga 154  Q
    |||||||||| |||||| ||||||||    
T  49620065 atttctctagccactaggctacttga 49620090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 154
Target Start/End: Complemental strand, 24134725 - 24134601
Alignment:
Q  31 tccccatgagtttagcttatttattacatgataatgtgcaatatgtgcaggggccgaagttcaaactt-ggacaccccccttattcattttaaatgtgaa 129  Q
    |||||||||| |||||| ||||  ||   |||||||  ||||||||||||||||||  |||| |||   ||||||||| ||||||||| || || |||||    
T  24134725 tccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcgaaccccggacaccccacttattcatctttaaggtgaa 24134626  T
Q  130 tttctctagtcactagactacttga 154  Q
    ||||||||| |||||| || |||||    
T  24134625 tttctctagccactaggctgcttga 24134601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 154
Target Start/End: Complemental strand, 48497312 - 48497190
Alignment:
Q  33 cccatgagtttagcttatttattacatgataatgtgcaatatgtgcaggggccgaagttcaaa-cttggacaccccccttattcattttaaatgtgaatt 131  Q
    ||||||||||||||| ||||  ||   |||||||  |||||||||||||||||| ||||| || |  |||||| ||  |||||||| || || || ||||    
T  48497312 cccatgagtttagctcatttggtaagggataatgcacaatatgtgcaggggccggagttcgaatcccggacactccatttattcatctttaaggtaaatt 48497213  T
Q  132 tctctagtcactagactacttga 154  Q
    ||||||| |||||| ||||||||    
T  48497212 tctctagccactaggctacttga 48497190  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 154
Target Start/End: Complemental strand, 3347733 - 3347680
Alignment:
Q  101 acaccccccttattcattttaaatgtgaatttctctagtcactagactacttga 154  Q
    ||||||| ||||||||| || || ||||||||||||||||||||| || |||||    
T  3347733 acaccccacttattcatctttaaggtgaatttctctagtcactaggctgcttga 3347680  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 154
Target Start/End: Complemental strand, 10123083 - 10123030
Alignment:
Q  101 acaccccccttattcattttaaatgtgaatttctctagtcactagactacttga 154  Q
    ||||||| ||||||||| || || |||||||||||||| |||||| ||||||||    
T  10123083 acaccccacttattcatctttaaggtgaatttctctagccactaggctacttga 10123030  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 154
Target Start/End: Complemental strand, 25031559 - 25031474
Alignment:
Q  70 aatatgtgcaggggccgaagttcaaactt-ggacaccccccttattcattttaaatgtgaatttctctagtcactagactacttga 154  Q
    |||||||||||||||||  |||| || |  ||||||||| ||||||||| || || |||||||||||||| |||||| || |||||    
T  25031559 aatatgtgcaggggccggggttcgaattccggacaccccacttattcatctttaaggtgaatttctctagccactaggctgcttga 25031474  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 154
Target Start/End: Complemental strand, 34702415 - 34702290
Alignment:
Q  30 gtccccatgagtttagcttatttattacatgataatgtgcaatatgtgcaggggccgaagttcaaactt-ggacaccccccttattcattttaaatgtga 128  Q
    ||||||||||| |||||| ||||  ||   |||||||  ||||||||||||||||||  |||| |||   ||||||| | ||||||||| || ||  |||    
T  34702415 gtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcgaaccccggacacctcacttattcatctttaagatga 34702316  T
Q  129 atttctctagtcactagactacttga 154  Q
    |||||| ||| |||||||||||||||    
T  34702315 atttctttagccactagactacttga 34702290  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 144
Target Start/End: Original strand, 50065033 - 50065118
Alignment:
Q  60 gataatgtgcaatatgtgcaggggccgaagttcaaa-cttggacaccccccttattcattttaaatgtgaatttctctagtcacta 144  Q
    |||||||  |||||||||||||| |||  |||| || || ||||||||| ||||||||| || || |||||||||||||| |||||    
T  50065033 gataatgcacaatatgtgcagggaccggggttcgaatctcggacaccccacttattcatctttaaggtgaatttctctagccacta 50065118  T

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Target: scaffold0001 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 154
Target Start/End: Original strand, 419705 - 419830
Alignment:
Q  30 gtccccatgagtttagcttatttattacatgataatgtgcaatatgtgcaggggccgaagttcaaactt-ggacaccccccttattcattttaaatgtga 128  Q
    ||||||||||| |||||| ||||  ||   |||||||  ||||||||||||||||||  |||| |||   ||||||||| ||||||||| || || ||||    
T  419705 gtccccatgagcttagctcatttggtaagggataatgaacaatatgtgcaggggccggggttcgaaccccggacaccccacttattcatctttaaggtga 419804  T
Q  129 atttctctagtcactagactacttga 154  Q
    |||||||||| |||||| ||||||||    
T  419805 atttctctagccactaggctacttga 419830  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 138
Target Start/End: Complemental strand, 41454930 - 41454820
Alignment:
Q  29 tgtccccatgagtttagcttatttattacatgataatgtgcaatatgtgcaggggccgaagttcaaactt-ggacaccccccttattcattttaaatgtg 127  Q
    |||||||||||| |||||| ||||  ||   |||||||  ||||||||||||||||||  |||| |||   ||||||||| ||||||||| || ||||||    
T  41454930 tgtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcgaaccccggacaccccacttattcatctttaatgtg 41454831  T
Q  128 aatttctctag 138  Q
    |||||||||||    
T  41454830 aatttctctag 41454820  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 45536755 - 45536836
Alignment:
Q  74 tgtgcaggggccgaagttcaaactt-ggacaccccccttattcattttaaatgtgaatttctctagtcactagactacttga 154  Q
    ||||||||||||| ||||| |||   ||||||||| ||||||||| ||||  |||||||||||||| |||||||| ||||||    
T  45536755 tgtgcaggggccggagttcgaaccccggacaccccacttattcatcttaatagtgaatttctctagccactagacaacttga 45536836  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 153
Target Start/End: Complemental strand, 27102362 - 27102310
Alignment:
Q  101 acaccccccttattcattttaaatgtgaatttctctagtcactagactacttg 153  Q
    ||||||| ||| ||||| ||||| |||||||||||||| ||||||||||||||    
T  27102362 acaccccactttttcatgttaaaggtgaatttctctagccactagactacttg 27102310  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 154
Target Start/End: Complemental strand, 1360166 - 1360112
Alignment:
Q  99 ggacaccccccttattcattttaaatgtgaatttctctagtcactagactacttga 154  Q
    ||||||||| ||||||||||||||| |||||||||||||  |||||| ||||||||    
T  1360166 ggacaccccacttattcattttaaa-gtgaatttctctaaccactaggctacttga 1360112  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 154
Target Start/End: Original strand, 4259882 - 4259977
Alignment:
Q  60 gataatgtgcaatatgtgcaggggccgaagttcaaactt-ggacaccccccttattcattttaaatgtgaatttctctagtcactagactacttga 154  Q
    |||||||  ||||||||||||||||||  |||| |||   |||| |||| ||||||||| || || |||||||||||||| |||||| ||||||||    
T  4259882 gataatgcacaatatgtgcaggggccggggttccaaccccggactccccacttattcatctttaaggtgaatttctctagccactaggctacttga 4259977  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 152
Target Start/End: Complemental strand, 280018 - 279976
Alignment:
Q  110 ttattcattttaaatgtgaatttctctagtcactagactactt 152  Q
    ||||||||||| || |||||||||||||||| |||||||||||    
T  280018 ttattcatttttaaggtgaatttctctagtcgctagactactt 279976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 152
Target Start/End: Original strand, 635834 - 635876
Alignment:
Q  110 ttattcattttaaatgtgaatttctctagtcactagactactt 152  Q
    ||||||||||| || |||||||||||||||| |||||||||||    
T  635834 ttattcatttttaaggtgaatttctctagtcgctagactactt 635876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 152
Target Start/End: Original strand, 821637 - 821679
Alignment:
Q  110 ttattcattttaaatgtgaatttctctagtcactagactactt 152  Q
    ||||||||||| || |||||||||||||||| |||||||||||    
T  821637 ttattcatttttaaggtgaatttctctagtcgctagactactt 821679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 154
Target Start/End: Complemental strand, 43413916 - 43413863
Alignment:
Q  101 acaccccccttattcattttaaatgtgaatttctctagtcactagactacttga 154  Q
    ||||||| ||||||||| || || |||||||||||||| |||||| ||||||||    
T  43413916 acaccccacttattcatctttaaggtgaatttctctagccactaggctacttga 43413863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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