View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14526_low_13 (Length: 235)
Name: NF14526_low_13
Description: NF14526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14526_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 12 - 217
Target Start/End: Complemental strand, 28310398 - 28310193
Alignment:
| Q |
12 |
agatgaacataaggtaaatattgtcttcaacaaaaattaaaattaagtaatatgagataaaacactaaaatatatctagttaatttgagtacaatctctt |
111 |
Q |
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|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28310398 |
agatgaacgtaaggtaaatattgtcttcaacagaaattaaaattaagtaatatgagataaaatactaaaatatatctagttaatttgagtacaatctctt |
28310299 |
T |
|
| Q |
112 |
tcttagaaatccaactaaagtactagacatattacttttatttttgtttcatgaacctacaaattaacatgaaaagcaaatgcacccttttctctctaac |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28310298 |
tcttagaaatccaactaaagtactagacatattactttaatttttgtttcatgaacctacaaattaacatgaaaagcaaatgcacccttttctctctaac |
28310199 |
T |
|
| Q |
212 |
aagcat |
217 |
Q |
| |
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|||||| |
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| T |
28310198 |
aagcat |
28310193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 14 - 195
Target Start/End: Complemental strand, 28305409 - 28305228
Alignment:
| Q |
14 |
atgaacataaggtaaatattgtcttcaacaaaaattaaaattaagtaatatgagataaaacactaaaatatatctagttaatttgagtacaatctctttc |
113 |
Q |
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|
||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
28305409 |
atgaacataaggtaaatattgtctttaacataaattaaaattaagtaatatgagataaaacactaaaatagttaaagttaatttgagtacaatctctttc |
28305310 |
T |
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| Q |
114 |
ttagaaatccaactaaagtactagacatattacttttatttttgtttcatgaacctacaaattaacatgaaaagcaaatgca |
195 |
Q |
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||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28305309 |
ttagaaaactaactaaagtactagacatattacttttatttttgtttcatgaacctacaaattaacatgaaaagcaaatgca |
28305228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 12 - 123
Target Start/End: Original strand, 19796000 - 19796109
Alignment:
| Q |
12 |
agatgaacataaggtaaatattgtcttcaacaaaaattaaaattaagtaatatgagataaaacactaaaatatatctagttaatttgagtacaatctctt |
111 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
19796000 |
agatgaacataaggtaaatattgtctt-aacagaaattaaaattaagtaatatgagataaaacactaaaa-cgatcaagttaatttgagtacaatctctt |
19796097 |
T |
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| Q |
112 |
tcttagaaatcc |
123 |
Q |
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|||||||||||| |
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| T |
19796098 |
tcttagaaatcc |
19796109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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