View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14526_low_15 (Length: 235)

Name: NF14526_low_15
Description: NF14526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14526_low_15
NF14526_low_15
[»] chr1 (9 HSPs)
chr1 (1-221)||(48585112-48585332)
chr1 (1-166)||(48639740-48639905)
chr1 (34-213)||(48666937-48667119)
chr1 (34-213)||(48661342-48661524)
chr1 (1-162)||(11547078-11547239)
chr1 (38-120)||(48628755-48628837)
chr1 (1-122)||(48618327-48618448)
chr1 (15-132)||(48652997-48653114)
chr1 (40-132)||(48656445-48656537)
[»] chr3 (1 HSPs)
chr3 (22-124)||(19665704-19665806)
[»] chr8 (2 HSPs)
chr8 (32-155)||(27223830-27223953)
chr8 (32-110)||(27228066-27228144)


Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 48585332 - 48585112
Alignment:
Q  1 ccattcctaggtaaactcgtcttagaagagtttaaggacttgtctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgaattcatag 100  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48585332 ccattcctaggtaaacttgtcttagaagagtttaaggacttatctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgaattcatag 48585233  T
Q  101 attatctttccaaaaaatcaatccccataagaactgttggtccttcatttaaaaatccaaatgcaaaaggagcaagcaacattcatggtgatttcgccaa 200  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48585232 attatatttcgaaaaaatcaatccccataagaactgttggtccttcatttaaaaatccaaatgcaaaaggagcaagcaacattcatggtgatttcgccaa 48585133  T
Q  201 gagcaatgatgatgataaaat 221  Q
    |||||||||||||||||||||    
T  48585132 gagcaatgatgatgataaaat 48585112  T

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Target: chr1; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 48639905 - 48639740
Alignment:
Q  1 ccattcctaggtaaactcgtcttagaagagtttaaggacttgtctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgaattcatag 100  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  48639905 ccatttctaggtaaactcatcttagaagagtttaaggacttgtctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgatttcatag 48639806  T
Q  101 attatctttccaaaaaatcaatccccataagaactgttggtccttcatttaaaaatccaaatgcaa 166  Q
    ||||| |||| |||||||||||| |||||||| || |||||||||| ||||| |||||||||||||    
T  48639805 attatatttcaaaaaaatcaatcaccataagacctattggtccttcgtttaagaatccaaatgcaa 48639740  T

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Target: chr1; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 34 - 213
Target Start/End: Complemental strand, 48667119 - 48666937
Alignment:
Q  34 aaggacttgtctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgaattcatagattatctttccaaaaaatcaatccccataagaa 133  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||| |||||| ||||  ||||||||||| ||||||||     
T  48667119 aaggacatgtctaaagtgttttgtgtattagtggatacctttgaagaattagagcatgatttcatcgattatatttcggaaaaatcaatcgccataagac 48667020  T
Q  134 ctgttggtccttcatttaaaaatccaaatgcaaaaggagcaagcaac---attcatggtgatttcgccaagagcaatgatgat 213  Q
    | ||||||||||  |||||||||||||| ||||| ||||||||||||   || | |||||||||| | |||||||||||||||    
T  48667019 ccgttggtcctttgtttaaaaatccaaaggcaaacggagcaagcaacaatatacttggtgatttcactaagagcaatgatgat 48666937  T

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Target: chr1; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 34 - 213
Target Start/End: Complemental strand, 48661524 - 48661342
Alignment:
Q  34 aaggacttgtctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgaattcatagattatctttccaaaaaatcaatccccataagaa 133  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||| |||||| |||| |||||||||||| ||||||||     
T  48661524 aaggacatgtctaaagtgttttgtgtattagtggatacctttgaagaattagagcatgatttcatcgattatatttcaaaaaaatcaatcaccataagac 48661425  T
Q  134 ctgttggtccttcatttaaaaatccaaatgcaaaaggagcaagcaac---attcatggtgatttcgccaagagcaatgatgat 213  Q
     |||||||||||  ||||| |||||||| ||||| ||||||||||||   | || |||||||||| | ||||| |||||||||    
T  48661424 atgttggtcctttgtttaagaatccaaaggcaaatggagcaagcaacaatactcttggtgatttcactaagagtaatgatgat 48661342  T

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Target: chr1; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 11547239 - 11547078
Alignment:
Q  1 ccattcctaggtaaactcgtcttagaagagtttaaggacttgtctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgaattcatag 100  Q
    ||||| ||||| | |||| |||||||| |||||||| | || ||||||||||||||||| ||||| || ||||||||||||||||| ||||| ||||| |    
T  11547239 ccatttctagggacactcatcttagaacagtttaagaatttatctaaagtgttttgtgttttagtagaaacctatgaagaactagaacatgatttcattg 11547140  T
Q  101 attatctttccaaaaaatcaatccccataagaactgttggtccttcatttaaaaatccaaat 162  Q
    | ||| || | |||||||| |||| ||||||| || ||||||| |  |||||||||||||||    
T  11547139 actatattacaaaaaaatccatccacataagacctattggtccattgtttaaaaatccaaat 11547078  T

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Target: chr1; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 38 - 120
Target Start/End: Complemental strand, 48628837 - 48628755
Alignment:
Q  38 acttgtctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgaattcatagattatctttccaaaaaatca 120  Q
    ||||||| ||| | ||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  48628837 acttgtccaaaatattttgtgtattagcggatacctatgaagaactagagcatgatttcatcgattatctttccaaaaaatca 48628755  T

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Target: chr1; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 48618327 - 48618448
Alignment:
Q  1 ccattcctaggtaaactcgtcttagaagagtttaaggacttgtctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgaattcatag 100  Q
    ||||| ||||| | |||| |||||||| |||||||| | ||||||||||| |||||||| ||||| || ||||||||||||||||||||||| ||||| |    
T  48618327 ccatttctagggacactcatcttagaacagtttaagaatttgtctaaagtattttgtgttttagtagaaacctatgaagaactagagcatgatttcattg 48618426  T
Q  101 attatctttccaaaaaatcaat 122  Q
    | ||| |||| |||||| ||||    
T  48618427 actatatttcaaaaaaaacaat 48618448  T

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Target: chr1; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 15 - 132
Target Start/End: Complemental strand, 48653114 - 48652997
Alignment:
Q  15 actcgtcttagaagagtttaaggacttgtctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgaattcatagattatctttccaaa 114  Q
    ||||||||||||| |  ||||| | || |||||||| |||||||| ||||| || ||||||||||||||||||||||| ||||| || ||| |||| ||     
T  48653114 actcgtcttagaacaaattaagaatttatctaaagtattttgtgttttagtagaaacctatgaagaactagagcatgatttcattgactatatttcaaac 48653015  T
Q  115 aaatcaatccccataaga 132  Q
    |||||||||| |||||||    
T  48653014 aaatcaatcctcataaga 48652997  T

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Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 132
Target Start/End: Complemental strand, 48656537 - 48656445
Alignment:
Q  40 ttgtctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgaattcatagattatctttccaaaaaatcaatccccataaga 132  Q
    ||||||||||  || |||||||| ||||||||||||||||||||||||| ||| || || |||||| ||||  |||| ||||||  |||||||    
T  48656537 ttgtctaaagcattgtgtgtatttgtggatacctatgaagaactagagcctgattttatcgattatatttcggaaaagtcaatcatcataaga 48656445  T

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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 124
Target Start/End: Original strand, 19665704 - 19665806
Alignment:
Q  22 ttagaagagtttaaggacttgtctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgaattcatagattatctttccaaaaaatcaa 121  Q
    |||||| |||||||| | || |||||||||||||||||||| |||||||  ||||| |||||||||||||| | ||| || ||| |||| ||||||||||    
T  19665704 ttagaacagtttaagaatttatctaaagtgttttgtgtattggtggatagttatgatgaactagagcatgattacatcgactatatttcgaaaaaatcaa 19665803  T
Q  122 tcc 124  Q
    |||    
T  19665804 tcc 19665806  T

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Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 32 - 155
Target Start/End: Complemental strand, 27223953 - 27223830
Alignment:
Q  32 ttaaggacttgtctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgaattcatagattatctttccaaaaaatcaatccccataag 131  Q
    ||||| ||||||||||||||||||||||||| || ||||| ||||| |||||||| ||||| ||||| || ||| |||| ||||| ||| ||   |||||    
T  27223953 ttaagaacttgtctaaagtgttttgtgtattggttgatacgtatgaggaactagaacatgatttcatcgactatgtttctaaaaattcagtcaaaataag 27223854  T
Q  132 aactgttggtccttcatttaaaaa 155  Q
    | || |||||||||  ||||||||    
T  27223853 acctattggtcctttgtttaaaaa 27223830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 110
Target Start/End: Complemental strand, 27228144 - 27228066
Alignment:
Q  32 ttaaggacttgtctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgaattcatagattatctttc 110  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||| ||| | || ||||| |||||| ||||| ||||    
T  27228144 ttaagaacttgtctaaagtgttttgtgtattggtggatacctatgaggaattggaacatgatttcataaattatatttc 27228066  T

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